Exercise 6: You have determined that a bacterial strain you are working with contains a single type of plasmid. After culturing a large bacterial population, you isolate the plasmid DNA and digest separate portions of it with each of two different restriction enzymes, BamH1 and Hpa1, as well as a double digest using both enzymes. You then fractionate the enzyme digests on an agarose gel and stain the gel with ethidium bromide (EtBr) to visualize the restriction fragment patterns. Your results are shown below. Size markers (in nucleotides) are indicated at left side of the gel. Using this data, construct a possible circular restriction map for the plasmid. BamHI BemHl Hpal Hpal 2,100 1,500 - 900 800 700 400 200 -

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Answer 1

A circular map is the pictorial representation of the plasmid with the enzymes that have the site where restriction occurs, which is known as restriction sites. The data provided in the gel electrophoresis is very useful in constructing a circular map of the plasmid.

The size markers (in nucleotides) are indicated at the left side of the gel as follows;21001500900800700400200----BamHI cuts the DNA at G/GATC 5' and 3' CCTAG/3' in a staggered way producing the 5' sticky end G/GATC and the 3' sticky end CCTAG/. This restriction enzyme is used for the analysis of the plasmid DNA sample. By using the data provided in the gel electrophoresis we can construct a possible circular restriction map for the plasmid.

The map is as shown below:From the above map we can conclude the following:The size of the plasmid is about 5,100 bpThe site of BamHI is at about 1,500 bpHpaI has one site at about 800 bp and another site at about 900 bp.

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Related Questions

You have isolated a microbe from the soil and sequenced its genome. Please discuss how you could use the sequence information to identify the organism and establish if it is a prokaryotic or eukaryotic microorganisms

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To identify the organism and establish whether it is a prokaryotic or eukaryotic microorganism after isolating a microbe from the soil and sequencing its genome, the following steps could be taken: Assemble the genome sequencing reads into a contiguous sequence (contig).

Contigs are produced by sequencing the DNA multiple times and assembling the resulting DNA sequences together. During this process, overlapping regions are identified and used to construct a single continuous DNA sequence.Step 2: Using a genome annotation software, a genome annotation is made. The annotation process identifies genes and noncoding sequences, predicts gene function, and assigns them to functional classes. Gene identification can help determine whether the organism is prokaryotic or eukaryotic.

Comparison of the genome sequence with sequences of known organisms in a database. The comparison of genome sequences is commonly used to identify microbes, as sequence similarity is an indicator of evolutionary relatedness. In the case of eukaryotes, a comparison of gene sequences can also be used to identify and classify organisms.Another way of establishing whether an organism is prokaryotic or eukaryotic is by looking at the organization of the genome. Prokaryotic genomes are generally simpler in their organization, with no nucleus or organelles, and they have a circular chromosome. Eukaryotic genomes, on the other hand, are usually larger and more complex, with multiple chromosomes, a nucleus, and various organelles such as mitochondria, chloroplasts, and endoplasmic reticulum.

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Louis Pasteur's experiments with the S-neck flasks showed that Microorganisms can be present in nonliving matter like air, liquids and dust Microbial life can be destroyed by heat All three answers are correct Microbial life can arise from nonliving material Only two of the answers are correct

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Only two of the answers are correct: "Microorganisms can be present in nonliving matter like air, liquids, and dust" and "Microbial life can be destroyed by heat."

Microorganisms, also known as microbes, are diverse microscopic organisms that exist in virtually every habitat on Earth. They encompass bacteria, archaea, fungi, protists, and viruses. Microorganisms play vital roles in various ecosystems and have significant impacts on human health and industry. They are involved in nutrient cycling, decomposition, and symbiotic relationships. Microbes can be both beneficial and harmful to humans, acting as pathogens causing infectious diseases, but also serving as sources of antibiotics, enzymes, and biotechnological products. They are essential for food production, such as fermentation in the production of bread, cheese, and yogurt. Studying microorganisms is crucial for understanding their ecological significance, evolutionary processes, and potential applications in various fields.

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You are interested in developing CRISPR mutation alleles of human gene CCR5. You first look up the gene sequence on public database GenBank. Based on the sort of mutant alleles you want to create you decide to design 3 guide RNA target sites within the first 1000bp of the gene (shown below).
Each target site should be 20 bp long and it must have a protospacer adjacent motif (PAM), which has the form NGG, immediately downstream (3’) of the target site. N means any base. The DNA sequence below shows the coding strand only, in the 5’--> 3’ direction.
1 cttcagatag attatatctg gagtgaagaa tcctgccacc tatgtatctg gcatagtgtg 61 agtcctcata aatgcttact ggtttgaagg gcaacaaaat agtgaacaga gtgaaaatcc 121 ccactaagat cctgggtcca gaaaaagatg ggaaacctgt ttagctcacc cgtgagccca 181 tagttaaaac tctttagaca acaggttgtt tccgtttaca gagaacaata atattgggtg 241 gtgagcatct gtgtgggggt tggggtggga taggggatac ggggagagtg gagaaaaagg 301 ggacacaggg ttaatgtgaa gtccaggatc cccctctaca tttaaagttg gtttaagttg 361 gctttaatta atagcaactc ttaagataat cagaattttc ttaacctttt agccttactg 421 ttgaaaagcc ctgtgatctt gtacaaatca tttgcttctt ggatagtaat ttcttttact 481 aaaatgtggg cttttgacta gatgaatgta aatgttcttc tagctctgat atcctttatt 541 ctttatattt tctaacagat tctgtgtagt gggatgagca gagaacaaaa acaaaataat 601 ccagtgagaa aagcccgtaa ataaaccttc agaccagaga tctattctct agcttatttt 661 aagctcaact taaaaagaag aactgttctc tgattctttt cgccttcaat acacttaatg 721 atttaactcc accctccttc aaaagaaaca gcatttccta cttttatact gtctatatga 781 ttgatttgca cagctcatct ggccagaaga gctgagacat ccgttcccct acaagaaact 841 ctccccggta agtaacctct cagctgcttg gcctgttagt tagcttctga gatgagtaaa 901 agactttaca ggaaacccat agaagacatt tggcaaacac caagtgctca tacaattatc 961 ttaaaatata atctttaaga taaggaaagg gtcacagttt ggaatgagtt tcagacggtt 1021 ataacatcaa agatacaaaa catgattgtg agtgaaagac tttaaaggga gcaatagtat
Come up with 3 guide RNA target sites

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Three guide RNA target sites within the first 1000 base pairs of the CCR5 gene, each 20 bp long with a PAM (NGG) immediately downstream: Target Site 1: 61-80 bp (AGTCCTCATAAATGCTTACT), Target Site 2: 101-120 bp (CCACCTAAGATCCTGGGTCC), Target Site 3: 181-200 bp (TAGTTAAAACTCTTTAGACA).

What are three guide RNA target sites within the first 1000 base pairs of the CCR5 gene, each 20 bp long with a protospacer adjacent motif (PAM) in the form of NGG immediately downstream?

Based on the given DNA sequence, we need to design three guide RNA target sites within the first 1000 base pairs (bp) of the CCR5 gene. Each target site should be 20 bp long and have a protospacer adjacent motif (PAM) in the form of NGG immediately downstream of the target site.

Here are three possible guide RNA target sites:

Target Site 1: 61-80 bp

   Target sequence: AGTCCTCATAAATGCTTACT

   PAM sequence: GGT

Target Site 2: 101-120 bp

   Target sequence: CCACCTAAGATCCTGGGTCC

   PAM sequence: AGA

Target Site 3: 181-200 bp

   Target sequence: TAGTTAAAACTCTTTAGACA

   PAM sequence: AAA

For Target Site 1, we selected the sequence starting from position 61 and ending at position 80. The target sequence is AGTCCTCATAAATGCTTACT, and the PAM sequence is GGT.

For Target Site 2, we chose the sequence starting from position 101 and ending at position 120. The target sequence is CCACCTAAGATCCTGGGTCC, and the PAM sequence is AGA.

For Target Site 3, we selected the sequence starting from position 181 and ending at position 200. The target sequence is TAGTTAAAACTCTTTAGACA, and the PAM sequence is AAA.

These guide RNA target sites can be used for CRISPR-Cas9 gene editing experiments to introduce specific mutations in the CCR5 gene.

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Suppose you have a couple who are both heterozygous for BOTH albinism and sickle cell anemia. Use A and a for the albinism alleles, and T and t for the sickle cell alleles. (Technically, the sickle alleles are codominant, but since we’re interested in the disease rather than sickle trait, we’ll use dominant/recessive notation.)
What are the genotypes for the couple described above? Their phenotypes? Keep in mind that a genotype must include two alleles per genetic locus! (Phenotype will be albino or not albino and sickle cell anemia or healthy.)

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The genotypes of the couple described are AaTt for the male and AaTt for the female. Their phenotypes will depend on whether they express the recessive traits or not.

For the couple described, the male is heterozygous for both albinism (Aa) and sickle cell anemia (Tt), and the female is also heterozygous for both traits (AaTt). The genotype for each individual includes two alleles per genetic locus.

In terms of phenotypes, the presence of the dominant allele (A) for albinism means that neither the male nor the female will express the albino phenotype. Therefore, their phenotype will be non-albino.

For sickle cell anemia, the presence of the recessive allele (t) is necessary for the expression of the disease. Since both individuals are heterozygous for the sickle cell trait (Tt), they will not have sickle cell anemia. Instead, their phenotype for sickle cell will be healthy or unaffected.

To summarize, the genotypes of the couple are AaTt, and their phenotypes are non-albino and healthy for sickle cell anemia.

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QUESTION 7 One argument described in the text is that personhood requires at least some of 5 distinct traits which include "consciousness" & "the capacity to feel pain", "the capacity to communicate", self-motivated activity", "reasoning", and "self-awareness, and that the unborn fetus lacks these characteristics, and is therefore not a person. What is the main criticism of this argument? O The bible reveals that the key to personhood is a soul, which is imparted at conception O Even very young fetuses in the first trimester exhibit all of the listed traits and thus should be considered persons. Most adults don't achieve all 5 of these traits consistently, so they are not a fair way to define personhood. This high standard could also be used to justify killing cognitively impaired individuals, or infanticide (killing babies) QUESTION 8 Which of the following are arguments described in the reading to counter the notion that from the moment of conception an embryo becomes a "potential person" and therefore it would be murder to abort the embryo? O Having the potential to become something does not give you the same nights as if you were that thing already. Therefore being a "potential person has no bearing Of an embryo is a person because of it's potential to develop into a person, then other cells with the same potential, such as an ovum (a human egg cell) should also be considered potential persons, and that would be bizarre O Utilitarian principles would justify abortion even if the embryo is considered a "potential person" because in many cases, this produces more benefit O Both of the first two responses are arguments against the "potential person" argument that embryo's should be protected from conception QUESTION 7 One argument described in the text is that personhood requires at least some of 5 distinct traits which include "consciousness" & "the capacity to feel pain", "the capacity to communicate", self-motivated activity", "easoning", and "self-awareness, and that the unborn fetus lacks those characteristics, and is therefore not a person. What is the main criticism of this argument? The bible reveals that the key to personhood is a soul, which is imparted at conception O Even very young fetuses in the first trimester exhibit all of the listed traits and thus should be considered persons. O Most adults don't achove all 5 of these traits consistently, so they are not a fair way to define personhood This high standard could also be used to justify killing cognitively impaired individuals, or infanticide (killing babies) QUESTION 8 Which of the following are arguments described in the reading to counter the notion that from the moment of conception an embryo becomes a "potential person" and therefore r would be murder to abort the embryo? Having the potential to become something does not give you the same nights as if you were that thing already. Therefore being a "potential person has no bearing. O fan embryo is a person because of it's potential to develop into a person, then other cells with the same potential, such as an ovum (a human egg cell) should also be considered potential persons, and that would be bizarre O Utilitarian principles would justify abortion even if the embryo is considered a "potential person" because in many cases, this produces more benefit. Both of the first two responses are arguments against the "potential person" argument that embryo's should be protected from conception

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The main criticism of the argument that personhood requires at least some of 5 distinct traits is that most adults don't achieve all 5 of these traits consistently, so they are not a fair way to define personhood.

This high standard could also be used to justify killing cognitively impaired individuals or infanticide killing babies Both of the first two responses are arguments described in the reading to counter the notion that from the moment of conception.

An embryo becomes a "potential person" and therefore it would be murder to abort the embryo. One argument against the notion is that having the potential to become something does not give you the same rights as if you were that thing already. Therefore being a "potential person has no bearing.

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What is the function of Troponin C, Troponin I and Troponin T? How do they each cause muscle contraction? Include detail

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Troponin C, Troponin I, and Troponin T are three subunits of the troponin complex found in muscle cells. They play crucial roles in regulating muscle contraction, specifically in skeletal and cardiac muscles.

Troponin C (TnC): Troponin C is a calcium-binding protein that is essential for muscle contraction. It binds to calcium ions (Ca2+) when the concentration of Ca2+ increases in the cytoplasm of muscle cells, triggering a series of events that lead to muscle contraction.

Troponin I (TnI): Troponin I is another subunit of the troponin complex that inhibits the interaction between actin and myosin, two key proteins involved in muscle contraction. Troponin I prevents muscle contraction in the absence of calcium ions. When calcium ions bind to troponin C, it causes a conformational change in troponin I, relieving its inhibitory effect on actin.

Troponin T (TnT): Troponin T is the third subunit of the troponin complex and plays a structural role in muscle contraction. Troponin T binds to tropomyosin, another protein that is associated with the actin filament. When troponin C binds to calcium ions, it induces a conformational change in troponin T, which in turn shifts the position of tropomyosin.

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What is the current situation in the area that was once the Love Canal?

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The Love Canal was a landfill located near Niagara Falls, New York that was used to dump hazardous waste. It was discovered that chemicals from the landfill had contaminated the soil and groundwater, leading to numerous health problems in the surrounding community.

The area was declared a state of emergency in 1978 and a massive cleanup effort was undertaken. Today, the area has been largely remediated and turned into a public park, although some concerns remain about residual contamination.

A number of lessons were learned from the Love Canal disaster, including the need for proper hazardous waste disposal and the importance of environmental regulation to protect public health.

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in your own words describe, compare, and comtrast. The first, second, and third set of the Missed Points of Intervention or Policy Mistakes.

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Missed points of intervention or policy mistakes can be categorized into three sets: early prevention, mid-stage intervention, and late-stage damage control.

The first, second, and third set of Missed Points of Intervention or Policy Mistakes refer to different stages or instances where opportunities for intervention or policy implementation were overlooked or where mistakes were made.

In general, the first set of missed points of intervention refers to situations where early intervention or preventive measures could have been implemented to address an issue or prevent it from escalating. These missed opportunities occur when the warning signs or early indicators of a problem are ignored or not acted upon in a timely manner.

The second set of missed points of intervention typically involves situations where mid-stage interventions or policy actions could have been taken to mitigate or manage an issue. These missed opportunities occur when the problem has already emerged but could still be addressed effectively with targeted measures.

Lastly, the third set of missed points of intervention pertains to cases where late-stage interventions or policy responses could have been implemented to minimize the impact or prevent further damage caused by a problem. These missed opportunities occur when the issue has already reached an advanced stage, but action could still be taken to mitigate the consequences.

Comparatively, these three sets of missed points of intervention share the common theme of recognizing opportunities for intervention or policy implementation. However, they differ in terms of the timing and nature of the intervention. The first set focuses on early preventive actions, the second set on mid-stage management, and the third set on late-stage damage control.

In summary, the first, second, and third sets of missed points of intervention or policy mistakes represent different stages where opportunities for intervention or policy actions were overlooked or not effectively implemented, ranging from early prevention to mid-stage management and late-stage damage control.

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Which of the following will most likely happen to a population when the size of the population far overshoots their carrying capacity? (such as the deer on St. Matthew's island) O the population will exhibit exponential growth O the population crashes. the birth rate increases and the death rate decreases. the growth rate remains unchanged.

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The most likely outcome to occur when the size of a population far overshoots their carrying capacity is that the population will crash. A population crash refers to a rapid decrease in the size of a population that results from the inability of the environment to support the population's carrying capacity.

The carrying capacity is the maximum number of individuals in a species that can be supported by a given habitat without causing any negative impacts on the environment.There are a number of factors that can contribute to a population crash, such as disease, predation, environmental degradation, and resource depletion. When a population overshoots their carrying capacity, competition for resources increases, which can lead to reduced food availability, malnutrition, and starvation. The death rate increases, and the birth rate decreases as a result of the scarcity of resources.

So, when the size of a population far overshoots their carrying capacity, the most likely outcome is that the population will experience a crash. This is due to the increased competition for resources, which leads to a decrease in the birth rate and an increase in the death rate.

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Which of the following will most likely disrupt the Hardy-Weinberg equilibrium that xists for a population of small rodents ving in a habitat with ample resources? a. The rodents reproduce frequently and have large litters, so the population size is increasing. b. Mate selection is completely random within the population of rodents. c. The population continues to remain isolated from other populations of the rodent. d. The coding region of a gene is altered in sperm produced by a particular male that mates with several of the female rodents, which produce many progeny as a result.

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The option that is most likely to disrupt the Hardy-Weinberg equilibrium in a population of small rodents living in a habitat with ample resources is: The coding region of a gene is altered in sperm produced by a particular male that mates with several of the female rodents, which produce many progeny as a result. So, option D is accurate.

The Hardy-Weinberg equilibrium describes the genetic equilibrium that occurs in an ideal, non-evolving population. It is based on several assumptions, including random mating, no genetic drift, no gene flow, no mutation, and no selection.

In this scenario, if the coding region of a gene is altered in the sperm produced by a male and is passed on to a large number of progeny, it introduces a genetic change into the population. This alteration can disrupt the equilibrium by changing the allele frequencies. As the altered gene spreads through the population, it can result in a departure from the expected genotype frequencies predicted by the Hardy-Weinberg equilibrium.

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1. What does the last tRNA bring in? Explain.
2. What is the DNA Complement and DNA Template of the mRNA
codons 5 ’ A U G C G U A A A U G G A G G G U A G A A U U C A A G U
A A ?

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1. The last tRNA brings in the amino acid corresponding to the last codon of the mRNA sequence during protein synthesis.

The tRNA molecule carries the specific amino acid that is complementary to the mRNA codon. The ribosome, which facilitates protein synthesis, recognizes the codon on the mRNA and matches it with the appropriate tRNA carrying the corresponding amino acid. This process ensures that the correct amino acid is added to the growing polypeptide chain, following the genetic code.

2. To determine the DNA complement and DNA template of the mRNA sequence, we need to use the rules of complementary base pairing. The base pairs in DNA are adenine (A) with thymine (T) and cytosine (C) with guanine (G).

Given the mRNA codon sequence: 5' A U G C G U A A A U G G A G G G U A G A A U U C A A G U

The DNA complement sequence is obtained by replacing each base in the mRNA with its complementary base in DNA:

DNA Complement: 5' T A C G C A T T T A C C T C C C A T C T T A A G T

The DNA template strand is the reverse complement of the mRNA sequence, as it serves as the template for mRNA synthesis during transcription:

DNA Template: 3' A C G C U A A A U G G A G G G U A G A A U U C A A G

In the DNA template, the bases are read in the opposite direction (from 3' to 5') compared to the mRNA sequence. The DNA template strand is complementary to the mRNA sequence, allowing RNA polymerase to synthesize a complementary mRNA molecule during transcription.

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The correct sequence of layers in the wall of the alimentary canal, from internal to external, is a.mucosa, muscularis, serosa, submucosa. b.submucosa, mucosa, serosa, muscularis. c.mucosa, submucosa, muscularis, serosa. d.serosa, muscularis, mucosa, submucosa.

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The correct sequence of layers in the wall of the alimentary canal, from internal to external, is mucosa, submucosa, muscularis, serosa.

The correct option is C.

Mucosa, submucosa, muscularis, serosa.What is the alimentary canal?The alimentary canal is a muscular tube that begins at the mouth and extends through the pharynx, esophagus, stomach, small intestine, and large intestine to the anus. It is composed of four distinct layers of tissues that function together to perform digestion and absorption of nutrients from food.

These layers are referred to as mucosa, submucosa, muscularis, and serosa.The four layers of the alimentary canal are:Mucosa: The mucosa is the innermost layer of the alimentary canal. It is made up of three layers of tissues: the epithelium, the lamina propria, and the muscularis mucosae. It produces mucus, enzymes, and hormones that aid in digestion.Submucosa: The submucosa is the second layer of the alimentary canal. It is composed of connective tissues that contain blood vessels, nerves, and lymphatics. It also contains glands that produce mucus, enzymes, and hormones.

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What is water and why is water essential to life? list three
properties of water and how each is useful to many species on
earth

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Water is a simple, inorganic molecule made up of two hydrogen atoms and one oxygen atom. It is essential to life on Earth, with many species relying on it for survival. The properties of water also make it a unique substance that is useful to many organisms.

Here are three properties of water and how they are useful to many species on Earth:

1. High heat capacity: Water has a high heat capacity, meaning it can absorb or release a lot of heat energy without changing temperature too much. This makes it an excellent medium for temperature regulation in living organisms. For example, when humans sweat, the water on their skin evaporates, taking heat away from the body and cooling it down.

2. Cohesion and adhesion: Water molecules stick to each other through cohesion and to other surfaces through adhesion. This property makes it possible for water to form droplets and move through small spaces. It also allows for capillary action, which is the movement of water up narrow tubes against the force of gravity. These properties are useful to plants for moving water from their roots to their leaves.

3. Universal solvent: Water is an excellent solvent, meaning it can dissolve a wide variety of substances. This property makes it essential for many biological processes, including digestion and waste removal. It also allows for the transport of nutrients and other important molecules throughout the body of many organisms.

In conclusion, water is essential to life on Earth because of its unique properties. Its high heat capacity allows for temperature regulation, cohesion and adhesion enable capillary action, and its ability to act as a universal solvent is vital for many biological processes.

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Fatty acid breakdown generates a large amount of acetyl CoA. What will be the effect of fatty acid breakdown on the activity of the Pyruvate Dehydrogenase (PDH) Complex?
a. The activity of the PDH complex would remain the same b. The activity of the PDH complex would decrease c. The activity of the PDH complex would increase

Answers

Pyruvate dehydrogenase (PDH) complex is a cluster of multienzyme that facilitates the conversion of pyruvate into acetyl-CoA.

Acetyl-CoA is a critical energy-generating molecule that helps provide energy to the human body. The PDH complex is regulated via negative feedback inhibition, which helps to control the rate of metabolism of pyruvate. Negative feedback inhibition happens when high energy levels in the body act as an inhibitor to metabolic pathways, leading to a reduction in enzyme activity.

Acetyl-CoA is a compound that is produced by a range of metabolic pathways, including fatty acid breakdown. When there is an increase in acetyl-CoA, the body will increase the activity of the Pyruvate Dehydrogenase (PDH) Complex. It's because Acetyl-CoA also serves as a key regulator of PDH activity.Acetyl-CoA regulates the activity of the PDH complex by inhibiting its activity. When there is an increase in acetyl-CoA, the PDH complex will be inhibited, which will help to control the rate of metabolism of pyruvate. Thus, we can say that the activity of the PDH complex would increase when there is an increase in acetyl-CoA.

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To correct sickle-cell anemia via gene therapy using a viral vector, the cells that would need to be collected from a sickle cell patient are called:
a. embryonic stem cells.
b. mesenchymal stem cells.
c. totipotent stem cells.
d. hematopoietic stem cells.
e. neural stem cells.

Answers

To correct sickle-cell anemia via gene therapy using a viral vector, the cells that would need to be collected from a sickle cell patient are hematopoietic stem cells. The correct option is d.

Hematopoietic stem cells are the cells responsible for generating the various types of blood cells, including red blood cells. In sickle-cell anemia, there is a mutation in the gene that codes for hemoglobin, resulting in the production of abnormal hemoglobin molecules that cause the characteristic sickle-shaped red blood cells.

To correct this mutation, gene therapy can be performed by introducing a functional copy of the gene into the patient's cells. Hematopoietic stem cells are an ideal target for gene therapy in sickle-cell anemia because they are the precursor cells that give rise to red blood cells.

By collecting hematopoietic stem cells from the patient, modifying them with the functional gene using a viral vector (such as a modified virus), and then reintroducing these genetically modified cells back into the patient's body, it is possible to restore normal hemoglobin production and alleviate the symptoms of sickle-cell anemia.

Therefore, the correct answer is d.

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Explain the relationship between each of the following terms: (a) energy and work (b) potential energy and kinetic energy (c) free energy and spontaneous changes

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(a) Energy and work are related concepts in physics. Energy is a broad term that refers to the capacity of a system to do work or transfer heat.

It exists in different forms such as kinetic energy, potential energy, thermal energy, and more. Work, on the other hand, is a specific type of energy transfer that occurs when a force is applied to an object, causing it to move in the direction of the force. Work is the process of converting energy from one form to another or transferring it from one object to another. (b) Potential energy and kinetic energy are two forms of energy. Potential energy is the energy possessed by an object due to its position or condition. It is stored energy that can be converted into other forms, such as kinetic energy. Kinetic energy, on the other hand, is the energy possessed by an object due to its motion. It depends on the mass of the object and its velocity. When an object moves, its potential energy may be converted into kinetic energy, and vice versa. (c) Free energy and spontaneous changes are related to thermodynamics. Free energy (G) is a measure of the energy available in a system to do useful work. It takes into account both the enthalpy (H) and entropy (S) of the system through the equation: ΔG = ΔH - TΔS, where ΔG is the change in free energy, ΔH is the change in enthalpy, T is the temperature, and ΔS is the change in entropy. Spontaneous changes are processes that occur without the need for external intervention and tend to increase the disorder or entropy of a system. In thermodynamics, a spontaneous process occurs when the change in free energy (ΔG) is negative, indicating that the system's energy is decreasing and becoming more stable.

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what are the primary hormones that participate in the regulation of the processes of digestion? check all that apply.

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The primary hormones that participate in the regulation of the processes of digestion are:

A) Gastrin - stimulates gastric acid secretion.

C) Cholecystokinin (CCK) - stimulates release of digestive enzymes and bile.

D) Secretin - regulates pancreatic and bile secretions.

B) Insulin - primarily regulates blood sugar levels and does not directly participate in digestion.

The primary hormones that participate in the regulation of the processes of digestion are:

A) Gastrin: Gastrin is a hormone released by cells in the stomach lining (G cells) in response to the presence of food. It stimulates the secretion of gastric acid, which aids in the breakdown of proteins, and promotes the contraction of stomach muscles for mixing and propulsion of food.

C) Cholecystokinin (CCK): CCK is released by cells in the duodenum and stimulates the release of digestive enzymes from the pancreas and bile from the gallbladder. It also acts as an appetite suppressant and contributes to the feeling of satiety.

D) Secretin: Secretin is produced by cells in the duodenum and regulates the secretion of bicarbonate from the pancreas and bile ducts. Bicarbonate helps neutralize the acidic chyme from the stomach, creating a favorable pH for digestion in the small intestine.

These hormones play vital roles in coordinating and regulating the digestive processes. They help stimulate the release of digestive enzymes, control the secretion of stomach acid, and promote the release of bile and pancreatic juices, all of which are crucial for proper digestion and absorption of nutrients.

B) Insulin, although an important hormone involved in regulating blood sugar levels, does not directly participate in the regulation of the digestive processes.

The question was incomplete. find the full content below:

what are the primary hormones that participate in the regulation of the processes of digestion? check all that apply.

a) Gastrin

B) Insulin

C) cholecystokinin

D) Secretin

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Question 58 If you were attempting to design a new drug for the treatment of a disease by interfering with enzyme activity in the disease-causing organism, which type of inhibitor would likely be the MOST effective? Select one: Oa. A substrate analog that is a mixed inhibitor. k A Ob. A transition-state analog that is a competitive inhibitor. transition-state analog that is an irreversible inhibitor. Od. A substrate analog that is a competitive inhibitor. Oe. A product analog that is an uncompetitive inhibitor.

Answers

In designing a new drug for the treatment of a disease by interfering with enzyme activity in the disease-causing organism, the type of inhibitor that would likely be the MOST effective is a transition-state analog that is a competitive inhibitor. The option B is correct answer.

What is Uncompetitive inhibitors ?

Uncompetitive inhibitors, bind to the enzyme-substrate complex and lower the reaction rate by preventing the release of the products. In the case of designing a new drug, an irreversible inhibitor would be the most effective choice for interference with enzyme activity in the disease-causing organism.

Why is a transition-state analog that is a competitive inhibitor the most effective in designing a new drug for the treatment of a disease by interfering with enzyme activity in the disease-causing organism?

The reason why a transition-state analog that is a competitive inhibitor is the most effective is that the transition-state analogs are structurally and electronically similar to the transition state of the substrate undergoing catalysis by the enzyme. They mimic the transition state of a substrate and thus bind to the enzyme with high affinity.

Since the inhibitor binds to the active site of the enzyme, it will have the most effective inhibitory activity. This specificity and high affinity for the active site of the enzyme make transition-state analogs effective inhibitors. In addition, the competitive inhibitors are reversible inhibitors, and the effect of the inhibitor is concentration-dependent.

Thus, a transition-state analog that is a competitive inhibitor would likely be the most effective. So, the correct answer is option B.

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Match the prompts to their answers. Answers may be reused. Researchers can identify possible transcription factors I. TADs analysis using II. bioinformatics Researchers can identify DNA binding enhancer regions for transcription factors using III. Chromatin conformation capture Researchers can identify enhancer regions for transcription factors using IV. promoter enhancer interaction domains that when mutated can alter gene expression V. Co-immunoprecipitation sequencing (Chip seq) Researchers can identify all kinds of cis-regulatory regions by using VI. bioinformatics search in databases for DNA sequences that may encode a protein expected to fold into a structure that is known as a DNA binding motif (e.g. helix loop helix) ✓ Researchers can define promoter/enhancer interactions using VII. transgenic organisms that have the relevant promoter/enhancers driving GFP expression Researchers found that some DNA sequences act as insulators in some cells and not in other cells using Researchers identified TADs using VIII. RNA sequencing technology TAD boundaries define Researchers can establish whether a transcription factor is an activator or a repressor of gene expression using Researchers detect global transcription levels and changes in transcription using

Answers

Bioinformatics search in databases for DNA sequences that may encode a protein expected to fold into a structure that is known as a DNA binding motif (e.g. helix-loop-helix). Hence option VI is correct.

Here are the matching prompts to their answers that you asked for in your question. Researchers can identify possible transcription factors by using VI.  bioinformatics search in databases for DNA sequences that may encode a protein expected to fold into a structure that is known as a DNA binding motif (e.g. helix-loop-helix).Researchers can identify DNA binding enhancer regions for transcription factors using III. Chromatin conformation capture.

Researchers can identify enhancer regions for transcription factors using V. Co-immunoprecipitation sequencing (ChIP-seq). Promoter enhancer interaction domains that when mutated can alter gene expression using IV. Researchers can identify all kinds of cis-regulatory regions by using II. bioinformatics. Researchers can define promoter/enhancer interactions using VII. transgenic organisms that have the relevant promoter/enhancers driving GFP expression. Researchers found that some DNA sequences act as insulators in some cells and not in other cells using I. TADs analysis using. VIII. RNA sequencing technology is used by Researchers to detect global transcription levels and changes in transcription. The TAD boundaries define the TADs, and researchers identify them by using I. TADs analysis using.

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Which of the following cells is haploid? O Daughter spermatogonium O Primary spermatocyte O Secondary spermatocyte O Mother spermatogonium

Answers

Option c is correct. The haploid cell in question is the secondary spermatocyte because they contain half the number of chromosomes compared to the original diploid cells.

In the process of spermatogenesis, which occurs in the testes, diploid cells called spermatogonia undergo mitotic divisions to produce primary spermatocytes. These primary spermatocytes then undergo the first meiotic division, resulting in the formation of haploid cells known as secondary spermatocytes. The secondary spermatocytes are haploid because they contain half the number of chromosomes compared to the original diploid cells. These haploid cells further undergo the second meiotic division to generate spermatids, which eventually mature into sperm cells.

It is important to note that the daughter spermatogonium and mother spermatogonium are diploid cells, as they have the same number of chromosomes as the original spermatogonium. The primary spermatocyte is also diploid because it has not undergone meiosis yet. Only after the first meiotic division does the cell become haploid, resulting in the formation of secondary spermatocytes.

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Which of the following statements is true?
a. Females cannot have cystic fibrosis
b. The father of a colorblind boy may be colorblind
c. A sex-linked allele cannot be dominant
d. The mother of a colorblind boy must be colorblind

Answers

Out of the given options, the correct statement is that the father of a colorblind boy may be colorblind.

Explanation:Color blindness, also known as color vision deficiency, is a condition in which the person is unable to distinguish between some specific colors or shades of colors. It is a sex-linked recessive disorder carried on the X chromosome. Therefore, the inheritance of this disorder follows a distinct pattern. Let us consider the statement options:

(a) Females cannot have cystic fibrosisThis statement is incorrect.

Cystic fibrosis is a genetic disease that affects both males and females.

It is a recessive genetic disorder that affects the lungs, pancreas, and other organs of the body.(b) The father of a colorblind boy may be colorblindThis statement is correct. Color blindness is a sex-linked recessive disorder that occurs due to the presence of an abnormal gene on the X chromosome.

Since males have only one X chromosome, if they inherit a faulty gene from their mother, they will develop color blindness. On the other hand, females have two X chromosomes, so even if they inherit one faulty gene, they will still have another normal copy that can compensate.

Hence, the father of a colorblind boy may be colorblind.

(c) A sex-linked allele cannot be dominantThis statement is incorrect. A sex-linked allele can be either dominant or recessive. Sex-linked genes are genes located on the sex chromosomes.

Since males have only one X chromosome, any gene present on it will be expressed, irrespective of whether it is dominant or recessive.(d) The mother of a colorblind boy must be colorblindThis statement is incorrect.

A mother who carries the faulty gene but has normal color vision can pass on the gene to her son. The son will have a 50% chance of inheriting the gene and developing color blindness.

Therefore, the mother of a colorblind boy need not be colorblind.To sum up, the correct statement is that the father of a colorblind boy may be colorblind. 

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Question 21 Fertilization makes a ... cell, which is called .... O haploid-zygote Ohaploid- ovum O diploid-ovum O diploid-zygote 2.5 pts

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Fertilization makes a diploid cell, which is called a zygote.Fertilization is the fusion of the male and female gametes to form a zygote. It takes place in the oviduct. During fertilization, a haploid sperm nucleus fuses with a haploid egg nucleus to create a diploid zygote. It is one of the most important reproductive processes.

When the egg and sperm combine, it creates a single cell that contains all of the genetic material needed to create a human being.A zygote is the initial diploid cell that results from the fusion of two haploid gametes during fertilization. It is a single cell that contains all of the genetic information required to produce a human being. The zygote is the first stage of embryonic development.

It begins to divide rapidly and undergoes numerous rounds of cell division, which leads to the formation of an embryo.Zygotes are diploid cells, which means they contain two complete sets of chromosomes. One set is inherited from the mother, and the other is inherited from the father. The zygote divides into two cells during the first stage of embryonic development. These two cells divide into four, and so on, as the embryo continues to grow and develop.

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Signal transduction- yeast genetics
in one sentence, what does alpha factor in the WT 'a' cell do?
(In terms of cell cycle/budding and FUS1 transcription)

Answers

In terms of cell cycle/budding and FUS1 transcription, the alpha factor in the WT 'a' cell induces the pheromone response pathway, leading to cell cycle arrest and activation of transcription factors that initiate FUS1 transcription.

In Saccharomyces cerevisiae, alpha factor is a peptide pheromone that activates a cell signaling pathway that controls mating and cell cycle progression. Alpha factor activates the G protein-coupled receptor, Ste2p, initiating a cascade of signal transduction events that result in the activation of the mitogen-activated protein kinase (MAPK) pathway. The pheromone response pathway results in cell cycle arrest and activation of transcription factors that initiate the transcription of mating-specific genes, including the FUS1 gene.

FUS1 encodes a protein involved in cell fusion and mating. The pheromone response pathway is a model system for studying signal transduction in yeast genetics, as many of the signaling proteins and pathways are conserved in higher eukaryotes.

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Three genotypes in a very large population have, on average, the following values of survival and fecundity, regardless of their relative frequencies: Genotype A1A1 A1A2 A2A2 Survival to adulthood (viability) 0.80 0.90 0.50 Number of offspring 3.0 4.0 8.0 Absolute fitness 2.4 3.6 4.0 Which of the following best describes what will happen at this locus in the long run? There will be a stable polymorphism because the heterozygote has a higher survival rate than either homozygote. Nothing will happen because the differences among genotypes in survival and fecundity cancel each other out. Allele A2 will be fixed eventually. One allele will be fixed but we cannot predict which one. Allele Al will be fixed eventually.

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The population under observation has three genotypes: A1A1, A1A2, and A2A2. These genotypes have survival rates of 0.80, 0.90, and 0.50, and fecundity rates of 3.0, 4.0, and 8.0, respectively.

The absolute fitness of these genotypes is 2.4, 3.6, and 4.0, respectively. Which of the following statements best describes what will happen to the locus in the long run? Allele A2 will eventually become fixed is the correct option. This is due to the fact that allele A2 has the highest fitness of the three alleles, with a fitness of 4.0, and will thus outcompete the other two alleles in the population over time. Eventually, A2 will become the only allele present in the population because it is more effective at reproducing and surviving than A1. Over time, A2 will increase in frequency while A1 will decrease, and ultimately, A2 will become fixed in the population because it will be the only allele remaining.

Therefore, allele A2 will be fixed eventually. The statement "There will be a stable polymorphism because the heterozygote has a higher survival rate than either homozygote" is incorrect.

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Which of the following statements is INCORRECT about mutualisms? Species do not usually engage in mutualisms for altruistic reasons, In some mutualisms, one or the other partner, under certain environmental conditions will withdraw the reward it usually provides There is an inherent conflict of interest between the partners in a mutualism, For an ecological interaction to be a mutualism, the net benchts must exceed the net costs for one partner but not the other.

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The incorrect statement about mutualisms is that "There is an inherent conflict of interest between the partners in a mutualism".

Mutualism is a type of ecological interaction in which two species benefit from one another. There are different types of mutualisms that may vary in terms of the balance of benefits and costs between partners.

In mutualisms, there is generally not an inherent conflict of interest between the partners, as both species benefit from the interaction. In contrast, in some other types of ecological interactions such as predation or competition, there is often a conflict of interest between the interacting species. So, the third statement is the incorrect statement about mutualisms because it goes against the very essence of what mutualism stands for.

Therefore, the statement "There is an inherent conflict of interest between the partners in a mutualism" is incorrect about mutualisms.

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Dehydration during exercise:
A. is dangerous if we lose 1-2% bodyweight
B. causes hyponatremia
C. may occur when runners are allowed to drink ad libidum
D. is a training technique to improve lactate t

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Dehydration during exercise can have various consequences, including danger if a person loses 1-2% of their body weight, the possibility of hyponatremia. It is not a recommended training technique to improve lactate threshold.

Dehydration during exercise can have significant impacts on the body and athletic performance. It is important to maintain proper hydration levels to ensure optimal functioning of the body's physiological processes.

A. Losing 1-2% of body weight through dehydration during exercise can be dangerous. Even a small percentage of dehydration can lead to decreased performance, increased heart rate, impaired thermoregulation, and reduced blood volume, which can affect cardiovascular function and increase the risk of heat-related illnesses.

B. Hyponatremia is a condition characterized by low sodium levels in the blood. While dehydration typically involves a loss of body fluids, hyponatremia occurs when excessive water intake dilutes the sodium concentration in the blood. This can be a potential risk during prolonged exercise if individuals consume large amounts of water without adequate electrolyte replenishment.

C. Allowing runners to drink ad libitum means they can drink freely as desired. In some cases, athletes may drink excessively during exercise, leading to hyponatremia or overhydration. Proper guidance and monitoring of fluid intake are important to prevent dehydration and hyponatremia.

D. Dehydration is not considered a training technique to improve lactate threshold. Lactate threshold training typically involves structured workouts designed to increase the body's ability to tolerate and clear lactate during intense exercise. Adequate hydration is important during training to support optimal performance and recovery.

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The heterozygous jiggle beetles represents pleiotropy. O polygenic. O incomplete dominance. codominance. complete domiance. Question 40 What can be concluded about the green allele and hot pink allele. O The green allele is recessive and the hot pink allele is dominant. O The green allele and pink allele are recessive. O The green allele is dominant and the hot pink allele is recessive. O The green allele and pink allele are dominant.

Answers

The green allele is recessive, and the hot pink allele is dominant in the case of the heterozygous jiggle beetles.

Based on the information provided, we can conclude that the green allele is recessive, and the hot pink allele is dominant. Pleiotropy refers to a single gene having multiple effects on an organism, which is not evident from the given context. Polygenic inheritance involves multiple genes contributing to a trait, which is also not mentioned in the scenario. Incomplete dominance occurs when neither allele is completely dominant over the other, resulting in an intermediate phenotype in heterozygotes. Codominance occurs when both alleles are expressed equally in the phenotype of heterozygotes. Complete dominance occurs when one allele is completely dominant over the other, resulting in the expression of only one allele in the phenotype of heterozygotes.

Since the scenario states that the beetles are heterozygous, meaning they carry two different alleles, we can deduce that the hot pink allele must be dominant because it is expressed in the phenotype. The green allele, on the other hand, is recessive because it remains unexpressed in the presence of the dominant hot pink allele. Therefore, the correct conclusion is that the green allele is recessive, and the hot pink allele is dominant.

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a) A chemical reaction has a ΔG0 of -686 kcal/mol. Is this an endergonic or exergonic reaction? How would the addition of enzyme change the ΔG this reaction?
b) Describe three types of negative ΔG0′ reactions that could be used in generating ATP.

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a) A chemical reaction with a ΔG0 of -686 kcal/mol is an exergonic reaction. In an exergonic reaction, the products have lower free energy than the reactants, and energy is released during the reaction.

b) Three types of negative ΔG0' reactions that could be used in generating ATP are Glycolysis, Krebs cycle and Electron Transport Chain (ETC).

a) A chemical reaction with a ΔG0 of -686 kcal/mol is an exergonic reaction. In an exergonic reaction, the products have lower free energy than the reactants, and energy is released during the reaction. The negative value of ΔG0 indicates that the reaction is spontaneous and can proceed without the input of external energy.

The addition of an enzyme to a reaction does not change the ΔG of the reaction. Enzymes function by lowering the activation energy required for a reaction to proceed, but they do not alter the overall energy change (ΔG) of the reaction. Therefore, the ΔG of the reaction would remain the same with or without the enzyme.

b) Three types of negative ΔG0' reactions that could be used in generating ATP are:

Glycolysis: The breakdown of glucose into pyruvate during glycolysis is an example of a negative ΔG0' reaction. This process releases energy in the form of ATP.Citric Acid Cycle (Krebs cycle): The series of reactions in the citric acid cycle, which occurs in the mitochondria, generates NADH and FADH2, leading to the production of ATP through oxidative phosphorylation. These reactions have negative ΔG0' values.Electron Transport Chain (ETC): The ETC is a series of electron transfer reactions in the inner mitochondrial membrane. It involves the transfer of electrons from NADH and FADH2 to oxygen, generating a proton gradient that drives ATP synthesis. The reactions in the ETC have negative ΔG0' values.

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At an A/G single nucleotide polymorphism in a gene, 10% of individuals in the city of Norman have the genotype GG. Individuals with this GG genotype are susceptible to a new hemorrhagic virus, and 5% die. Assume those with AA and AG genotypes do not die, and everyone in the town catches the virus. Estimate the reduction in the G allele frequency after one generation due to negative selection

Answers

The estimated reduction in the G allele frequency after one generation due to negative selection is 0.5%.

To estimate the reduction in the G allele frequency after one generation due to negative selection, we need to consider the genotype frequencies and the mortality rate associated with the GG genotype.

Given that 10% of individuals have the GG genotype, we can assume that the G allele frequency is 20% (since GG individuals have two G alleles). If 5% of individuals with the GG genotype die, that means 5% of 10%, or 0.5%, of the total population will be lost due to mortality associated with the GG genotype.

In the next generation, the frequency of the G allele will be determined by the remaining individuals who survived. If we assume that AA and AG individuals do not die from the virus, then the G allele frequency in the surviving population will remain the same. Therefore, the reduction in the G allele frequency due to negative selection will be 0.5%.

However, it's important to note that this estimation assumes no other factors influencing the allele frequencies, such as genetic drift, mutation, or migration. Additionally, the assumption that AA and AG individuals do not die from the virus might oversimplify the dynamics of the disease. Therefore, this estimate serves as a simplified approximation and may not accurately represent the complex dynamics of allele frequencies in a population.

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Question 22 Glycolysis occurs in the a. nucleus b. ribosomes c. cytoplasm d. mitochondria e. vacuoles Question 23 When our muscle cells run out of oxygen, they continue to make ATP by switching to a. ethanol production b. electron transport c. fermentation d. citric acid cycle
Question 24 Photosynthesis and cellular respiration use electron carriers. Which of the following is an electron carrier? a. ATP b. NADH c. oxygen d. carbon dioxide

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22. Glycolysis occurs in the cytoplasm. 23: When our muscle cells run out of oxygen, they continue to make ATP by switching to fermentation.

23.When muscle cells run out of oxygen, they switch to a different metabolic pathway called fermentation to continue producing ATP. The correct answer is c. fermentation.

24.Among the options provided, the electron carrier is NADH (option b).

Question 24: NADH is an electron carrier. Photosynthesis and cellular respiration use electron carriers. NADH is an electron carrier. This molecule acts as a hydrogen and electron carrier during cellular respiration. During glycolysis, a single molecule of glucose is broken down into two pyruvate molecules, which results in the formation of two ATP and two NADH molecules.

The cytoplasm is where glycolysis occurs. The term used to describe this process is fermentation. When our muscle cells run out of oxygen, they continue to make ATP by switching to fermentation. Glycolysis produces ATP even in the absence of oxygen, but in the absence of oxygen, the pyruvate molecules produced during glycolysis enter into the fermentation process rather than the citric acid cycle of cellular respiration.

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