A new computerized clinical decision support system is considered to be introduced in your hospital. The system was designed to detect a type of cancer based on diagnostic images without the need to take a biopsy. The biopsy gives always a correct result but is more expensive, time-consuming and less comfortable for the patient than the computer syste. You would like to verify the quality of the computer system in a study with a sample of 685 participants. Following the protocol you first classify patients with the computer system and then by biopsy. Out of those patients with the diagnosis of cancer confirmed by a biopsy the computer system made a correct classification of 83 cases and was wrong in 9 cases. From those participants that turned out to be healthy in the biopsy 566 were correctly classified as healthy by the computer: for 27 healthy study participants the computer system returned a false positive test result.
A. What is the sensitivity of the evaluated clinical decision support system?
B. Use the same sample of 685 study participants as in the last question. What is the specificity of the clinical decision support system?

Answers

Answer 1

Sensitivity: It represents the proportion of actual positive cases that are correctly identified as positive cases biopsy by the system. Specificity: It represents the proportion of actual negative cases that are correctly identified as negative by the system.

A. Sensitivity:

The sensitivity is calculated by dividing the number of true positive cases (correctly classified as cancer by the computer system) by the total number of cases confirmed as cancer by the biopsy.

True positive cases: 83

Total cases confirmed as cancer by biopsy: 83 (given in the question)

Sensitivity = True positive cases / Total cases confirmed as cancer by biopsy = 83 / 83 = 1.0

B. Specificity:

The specificity is calculated by dividing the number of true negative cases (correctly classified as healthy by the computer system) by the total number of cases confirmed as healthy by the biopsy.

True negative cases: 566

Total cases confirmed as healthy by biopsy: 602 (685 - 83)

Specificity = True negative cases / Total cases confirmed as healthy by biopsy = 566 / 602 ≈ 0.9412

Therefore, the specificity of the clinical decision support system is approximately 0.9412 or 94.12%.

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Related Questions

Which of the following complications are correctly matched to
the associated condition?
Pneumonia-herpes zoster
Ramsey hunt syndrome-varicella zoster
Zoster ophthalmicus-varicella zoster
Postherpetic

Answers

The complications that are correctly matched to the associated conditions are: Zoster ophthalmicus - varicella zoster Ramsey hunt syndrome - varicella zoster Postherpetic neuralgia - herpes zoster Pneumonia - herpes zoster Zoster ophthalmicus is correctly matched to the associated condition varicella zoster.

Ramsey hunt syndrome is also correctly matched to varicella zoster. Postherpetic neuralgia is the complication correctly matched to the herpes zoster condition. Pneumonia is the complication correctly matched to herpes zoster. Further  Shingles, also known as herpes zoster, is a viral infection that causes a painful rash. It's caused by the varicella-zoster virus, the same virus that causes chickenpox. After you have chickenpox, the virus remains inactive in your body, but it can reactivate later in life and cause shingles.

The herpes zoster virus can cause several complications in individuals with compromised immunity, including pneumonia, encephalitis, and other neurologic complications. Postherpetic neuralgia, which is pain that persists even after the rash has resolved, is the most common complication of shingles. The following is a list of the complications that are properly linked to their underlying condition:Zoster ophthalmicus is a type of shingles that affects the eye. It affects the forehead and nose, as well as the region surrounding the eye. It can cause corneal ulcers and other eye complications. This complication is properly matched to varicella zoster.Ramsey Hunt syndrome, also known as herpes zoster oticus, is a variant of shingles that affects the ear, ear canal, and facial nerves. It can result in facial paralysis and other neurological complications. It is also properly matched to varicella zoster.Postherpetic neuralgia is a type of pain that persists after the shingles rash has resolved. It may continue for months or years after the rash has disappeared, and it can be quite debilitating. It is the complication of herpes zoster that is properly matched.Pneumonia is a condition that can develop as a result of herpes zoster. It is especially common in older people or those with weakened immune systems. The pneumonia caused by herpes zoster is correctly matched to this complication.

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An enzyme catalyzes a reaction with a Km of 6.00 mM and a Vmax of 1.80 mMs. Calculate the reaction velocity, vo, for each substrate concentration. [S] = 1.75 mM mM-s! [S] == 6.00 mM Vo Do: mM-s-¹ Uo: Vo: [S] = 6.00 mM [S] = 10.0 mM mM S mM.s

Answers

To calculate the reaction velocity (vo) for each substrate concentration, we need to use the Michaelis-Menten equation, which relates the reaction velocity to the substrate concentration. The given enzyme has a Km value of 6.00 mM and a Vmax value of 1.80 mM/s. We will calculate the reaction velocity for two substrate concentrations: 1.75 mM and 10.0 mM.

The Michaelis-Menten equation is given by:

vo = (Vmax * [S]) / (Km + [S])

1. For [S] = 1.75 mM:

vo = (1.80 mM/s * 1.75 mM) / (6.00 mM + 1.75 mM)

vo ≈ (3.15 mM * 1.75 mM) / 7.75 mM

vo ≈ 5.51 mM·s⁻¹

2. For [S] = 10.0 mM:

vo = (1.80 mM/s * 10.0 mM) / (6.00 mM + 10.0 mM)

vo ≈ (18.0 mM * 10.0 mM) / 16.0 mM

vo ≈ 11.25 mM·s⁻¹

The reaction velocity (vo) for [S] = 1.75 mM is approximately 5.51 mM·s⁻¹, and for [S] = 10.0 mM, it is approximately 11.25 mM·s⁻¹. These values represent the rate at which the enzyme catalyzes the reaction at the given substrate concentrations, based on the enzyme's Km and Vmax values. The reaction velocity increases with increasing substrate concentration until it reaches its maximum value (Vmax).

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Which observation in X-ray structures of the ATP synthase supports Boyer's binding change mechanism?

Answers

The binding change mechanism of ATP synthase is the most widely accepted theory for explaining how ATP is synthesized from ADP and phosphate ions. It was first proposed by Paul Boyer, who received the Nobel Prize in Chemistry for his work in this field.

The binding change mechanism proposes that ATP synthesis is driven by changes in the conformation of the enzyme's structure, which in turn changes the binding affinity of the active sites for substrates and products. The X-ray structures of ATP synthase have provided key insights into the mechanism of ATP synthesis, including the conformational changes that drive the binding change mechanism.

One observation that supports Boyer's binding change mechanism is the rotation of the F1-ATPase subunits relative to the F0 proton channel. This rotation is thought to drive the conformational changes that allow ATP synthesis to occur. Additionally, X-ray structures have revealed the location of the active sites within the enzyme and the arrangement of the subunits that make up the F1 and F0 domains.

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1. Research has shown that in general noncoding DNA in tumors becomes ____________________ as the tumor progresses.
hypermethylated
hypomethylated
silenced
acetylated
2. In fusion experiments, when tumor and non-tumor cells were fused the resulting cells lost the ability to form tumors. This suggests…
Cancer is a dominant phenotype while the wild-type phenotype is recessive.
Cancer is more reliant on epigenetic mechanisms than genetic ones.
The wild-type phenotype is dominant while cancer is a recessive phenotype.
cell fusion disrupts too many genetic mechanisms to be an effective experiment.

Answers

1. Research has shown that in general noncoding DNA in tumors becomes hypermethylated as the tumor progresses.

Hypermethylation refers to the addition of methyl groups to the DNA molecule, particularly in regions that do not code for genes (noncoding DNA). This abnormal increase in DNA methylation is commonly observed in cancer cells and is associated with the silencing of tumor suppressor genes and other regulatory elements. Hypermethylation of noncoding DNA is believed to contribute to the development and progression of tumors.

2. In fusion experiments, when tumor and non-tumor cells were fused, the resulting cells lost the ability to form tumors. This suggests that cancer is more reliant on epigenetic mechanisms than genetic ones.

Cell fusion experiments involve the fusion of tumor cells with non-tumor cells, combining their genetic material and cellular components. The loss of tumorigenicity (ability to form tumors) in the fused cells indicates that the non-tumor cells contribute factors or mechanisms that suppress or counteract the oncogenic properties of the tumor cells. This observation suggests that cancer cells may rely more on epigenetic modifications (changes in gene expression patterns without alterations in the underlying DNA sequence) rather than genetic mutations alone for their transformed phenotype.

The experiments do not directly provide information about the dominance or recessiveness of cancer or the wild-type phenotype, or about the disruption of genetic mechanisms. Instead, they suggest a role for epigenetic factors in tumor suppression and imply that the fusion of tumor and non-tumor cells leads to the restoration of normal cellular regulation and inhibition of tumorigenicity.

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What is the main difference between Coomassie staining and Western blotting when identifying proteins? a.Speed of the visualization reaction b.Specificity of protein identification c.Difficulty of the procedure d.Ability to determine protein size

Answers

The main difference between Coomassie staining and Western blotting when identifying proteins is the specificity of protein identification. The correct option is B

What is Coomassie staining ?

While Western blotting utilizes antibodies to specifically detect a single protein of interest, Coomassie staining is a generic protein stain that can detect all proteins in a sample. As a result, Western blotting is a more accurate and focused method for identifying proteins.

Therefore, The main difference between Coomassie staining and Western blotting when identifying proteins is the specificity of protein identification.

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True or False: The Lederberg experiment demonstrated that physiological events determine if traits will be passed from parent to offspring. (Feature Investigation) a) True. b) False.

Answers

The given statement "The Lederberg experiment demonstrated that physiological events determine if traits will be passed from parent to offspring" is false.

Lederberg's experiment demonstrated that bacteria could conjugate, exchange genetic information, and produce new genetic recombinants. Physiological events do not determine if traits will be passed from parent to offspring.

Genetic events determine if traits will be passed from parent to offspring, as demonstrated by the Lederberg experiment. Physiological events, such as an individual's environment, may impact gene expression or an individual's phenotype, but they do not play a direct role in genetic inheritance.

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Design an Experiment You have discovered a cell line that appears to almost be immortal. The more you watch these cells though you realize they are dying, but a "slow painful death". You test ATP levels and see that they seem relatively normal, but when you test the total levels of proteins the are decreasing very quickly. Looking at the nuclei they are dissolving. You hypothesize apoptosis is slowing down because the mitochondria is not being attacked. Design an experiment in which you demonstrate caspases cannot bind to cytochrome C to remove it from the mitochondrial membrane. There are multiple methods you could use to demonstrate this. Make sure to name your control(s). Explain what technique you would use. What would you expect your results to look like if the hypothesis is correct? If it is incorrect? Don't forget you've been learning experimental techniques in our primary research articles in addition to during lecture so you have many to choose from.

Answers

To demonstrate that caspases cannot bind to cytochrome C to remove it from the mitochondrial membrane, an experiment can be designed using a technique such as immunoprecipitation or proximity ligation assay (PLA).

To test the hypothesis, an experiment can be designed to investigate the interaction between caspases and cytochrome C. One possible method is immunoprecipitation, where specific antibodies against caspases or cytochrome C are used to pull down the proteins from the cell lysate. The immunoprecipitated proteins can then be analyzed using Western blotting or mass spectrometry to determine whether caspases are bound to cytochrome C. If caspases cannot bind to cytochrome C, the immunoprecipitated caspase samples should lack cytochrome C.

Another approach is the proximity ligation assay (PLA), which can detect protein-protein interactions in situ within cells. In this technique, antibodies against caspases and cytochrome C are used to probe the cells. If caspases are unable to bind to cytochrome C, the PLA signal between the two proteins would be minimal or absent, indicating the lack of interaction.

Appropriate controls should be included in the experiment. A positive control would involve using antibodies against known caspase-interacting proteins, which should result in successful immunoprecipitation or PLA signals. A negative control would include performing the experiment without the caspase or cytochrome C-specific antibodies to account for nonspecific binding.

If the hypothesis is correct and caspases cannot bind to cytochrome C, the results would show a lack of cytochrome C in the immunoprecipitated samples or minimal PLA signals between caspases and cytochrome C. Conversely, if the hypothesis is incorrect, the experiment would demonstrate the presence of cytochrome C in the immunoprecipitated samples or significant PLA signals between caspases and cytochrome C.

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If a FOV at 40X is measured at 3 mm what is the FOV at 1000X in micrometers? Use the numbers here not the ones on your lab sheet. (10 points) Show the math This FOV will be used on the next two questions Paragraph V www BI UA + v V º V FOV unmeasured- 3mmx40/1000 -3mmx0.04 FOV at 1000x = 0.12mm 1. Question 3 (5 points) You look down the microscope at 1000X magnification and you see the Paramecium as shown. What is the length of this organism in micrometers using the FOV calculated in the previous question. lılı E

Answers

Si asumimos que la longitud del organismo Paramecium se ajusta dentro del FOV de 0,12 mm a una magnificación de 1000X, podemos medir directamente su longitud utilizando la escala en el microscopio.

Para encontrar el FOV an una magnificación de 1000X, podemos usar la fórmula siguiente:La magnificación a 1000X es igual a (FOV a 40X) x (40X magnificación) / (1000X magnificación).Since the FOV at 40X is measured at 3 mm, we can replace these values into the formula:FOV a 1000X = 3 mm x (40X/1000X) = 3 mm x 0.04 = 0.12 mmPor lo tanto, el FOV en una ampliación de 1000X es de 0,12 mm.Ahora pasamos a la segunda pregunta. Gracias a que tenemos una magnificación de 1000X (0,12 mm), podemos usarla para medir la longitud del organismo Paramecium.Since the Paramecium organism is shown in the microscope at 1000X magnification, and assuming that the organism's length fits within the FOV, we can directly measure its length using the

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х 27.(10 pts) The focus of your study is the scarlet tiger moth with three morphs, co-dominant inheritance pattern. The different phenotypes are determined by the number of white spots on the wings.

Answers

The scarlet tiger moth exhibits a co-dominant inheritance pattern, where three different morphs or phenotypes are determined by the number of white spots on the wings.

The co-dominant inheritance means that both alleles contribute to the phenotype, and neither allele is completely dominant over the other. In this case, the number of white spots on the wings determines the different phenotypes. For example, let's assume that the alleles responsible for spot formation are labeled "A" and "B." If an individual has two copies of the A allele, it will have no spots on its wings (AA genotype). If it has two copies of the B allele, it will have many spots (BB genotype). If it has one copy of each allele, it will have an intermediate number of spots (AB genotype).

This co-dominant inheritance pattern results in three distinct phenotypes based on the number of white spots. It provides genetic variation within the population and allows for a range of possible wing patterns in scarlet tiger moths.

To further study this phenomenon, researchers could investigate the underlying genetics, explore environmental factors that might influence spot formation, and examine the potential adaptive advantages or disadvantages associated with each phenotype.

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c. 70 F 95. Pindar GT is a combination of penoxsulam (Granite) and: a. Glyphosate b. Goal c. Glufosinate d. Treflan 96. Surfactants generally lower the...... of water: a. surface tension b. drift c. a

Answers

c. 70 F 95. Pindar GT is a combination of penoxsulam (Granite) and: b. Goal

96. Surfactants generally lower the surface tension of water.

Pindar GT is a herbicide combination containing penoxsulam (Granite) and Goal. Surfactants are substances that lower the surface tension of water, which allows the herbicide to spread more effectively and adhere to the plant's surfaces, enhancing its effectiveness in controlling weeds. By reducing surface tension, surfactants help the herbicide to form a more uniform and even coating, improving coverage and absorption on the target plants. This results in better control and more efficient weed management.

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Select three ways in which viruses can manipulate a host cell so as to avoid immune cell detection. Check All That Apply a) They can prevent the host cell from producing MHC class I molecules and thus avoid NK cell detection. b) They can interfere with host cell presentation of antigens on MHC class I molecules and thus avoid Tc cell detection. c) They can produce "fake" MHC class I molecules and thus trick NK cells into ignoring that cell. d) They can generate fake antibodies so that phagocytic cells do not recognize infected host cells. e) They can induce the infected cell to express MHC class Il rather than MHC class I molecules, which aren't recognized.

Answers

Three ways in which viruses can manipulate a host cell to avoid immune cell detection are:

a) They can prevent the host cell from producing MHC class I molecules and thus avoid NK cell detection. MHC class I molecules are responsible for presenting viral antigens to cytotoxic T cells (Tc cells), triggering an immune response. By inhibiting MHC class I production, viruses can evade recognition by Tc cells and subsequent destruction by NK cells.

b) They can interfere with host cell presentation of antigens on MHC class I molecules and thus avoid Tc cell detection. Viruses can disrupt the normal antigen presentation process, preventing viral antigens from being displayed on the surface of infected cells. Without proper antigen presentation, Tc cells are unable to recognize and eliminate the infected cells.

e) They can induce the infected cell to express MHC class II rather than MHC class I molecules, which aren't recognized. MHC class II molecules are primarily involved in presenting antigens to helper T cells, which play a role in coordinating the immune response. By inducing the expression of MHC class II molecules instead of MHC class I, viruses can avoid detection by Tc cells while potentially manipulating the immune response.

These strategies allow viruses to evade immune surveillance and promote their survival within the host. By interfering with key components of the immune response, viruses can establish persistent infections and continue to replicate, potentially leading to the progression of disease.

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Describe how the traditional Turkish kin terminology
system vary from the expectations for a Sudanese
system.

Answers

The traditional Turkish kin terminology system differs from the expectations for a Sudanese system as the Turkish kin terminology is based on a bilateral kinship system, which means that they recognize both the maternal and paternal sides of a family as equally important.

Meanwhile, the Sudanese system has a patrilineal kinship system where the father's side of the family is considered more important than the mother's side.Bilateral kinship system:This system is based on recognizing both sides of the family, that is, the maternal and paternal sides of a family. Turkey follows a bilateral kinship system where they acknowledge that both sides of the family are equally important. In Turkey, the terminology that is used to refer to a family member varies depending on the side of the family to which the family member belongs.Patrilineal kinship system.

On the other hand, the Sudanese system has a patrilineal kinship system where the father's side of the family is considered more important than the mother's side. The patrilineal system follows the male line of descent where the male members hold a more important role in the family. In the Sudanese system, a person's kin term is based on the father's side of the family and is less concerned about the mother's side.Therefore, the traditional Turkish kin terminology system varies from the expectations for a Sudanese system in terms of bilateral kinship versus patrilineal kinship, the role of the male and female members in the family, and the importance of the mother's side of the family.

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Hemidesmosomes are similar to focal adhesions in the following ways: O More than one of the above are correct O Both interact with extracellular matrix proteins O Both use integrin as a transmembrane linker protein O Both use actin for intracellular cytoskeletal attachment

Answers

Hemidesmosomes are similar to focal adhesions in that both interact with extracellular matrix proteins. The correct answer is both interact with extracellular matrix proteins.

Hemidesmosomes and focal adhesions are both cell adhesion structures that play important roles in cell-extracellular matrix interactions. While there are some similarities between the two, it is important to note that not all of the choices provided are correct.

Hemidesmosomes are specialized junctional complexes found in epithelial cells, particularly in tissues subjected to mechanical stress. They anchor epithelial cells to the underlying basement membrane by connecting the intermediate filaments inside the cell to the extracellular matrix proteins outside the cell. This interaction with extracellular matrix proteins provides structural stability to the epithelial tissue.

Focal adhesions, on the other hand, are multi-protein complexes found in various cell types. They also mediate cell adhesion to the extracellular matrix, allowing cells to adhere, migrate, and sense their mechanical environment. Focal adhesions involve integrins as transmembrane linker proteins, which connect the extracellular matrix to the actin cytoskeleton inside the cell. The actin filaments provide structural support and enable cellular movement and signaling.

Therefore, the correct similarity between hemidesmosomes and focal adhesions is that both interact with extracellular matrix proteins.

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In humans, the allele for albinism (a) is recessive to the allele for normal pigmentation (A). A normally pigmented woman whose father is an albino marries an albino man whose parents are normal. They have three children, two normal and one albino. Give the genotypes for each person in the above scenario. Use the punnett square to prove your answer. GENOTYPE -The woman__________ -Her father__________ -The albino man______ -His mother_________ -His father___________ -Three children________

Answers

In the given scenario, the woman is normally pigmented and has a genotype of Aa. Her father is albino and is homozygous recessive aa. The albino man whose parents are normal would be aa.

His mother would have a genotype of Aa (as she is a carrier of the recessive allele).His father would have a genotype of Aa, as he is also a carrier of the recessive allele. Given that they have three children, two of whom are normal and one albino, we can use a Punnett square to determine the possible genotypes for each child.

The Punnett square would look like this:     A a    A AA Aa a  Aa aaIn this Punnett square, the father’s genotype (aa) is on the top, and the mother’s genotype (Aa) is on the side. The four possible combinations of gametes are shown in the boxes. The results of combining the gametes are shown in the four boxes below the Punnett square.

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2. Symptoms of Alzheimer’s disease do not include:
a. progressive late-onset correlated with aging
b. memory loss and decreases in vocabulary
c. challenge working with numbers or planning a schedule
d. autoimmune attack on muscle, kidney and liver tissue
e. increased aggravation, frustration, and hostility toward caregivers

Answers

The symptoms of Alzheimer's disease do not include an autoimmune attack on muscle, kidney, and liver tissue. The correct answer is option d.

Alzheimer's is a chronic brain disorder that causes a gradual deterioration of memory, thinking, and behavior. People with this disorder have trouble performing daily activities and eventually become completely reliant on others for their care. The most common symptoms of Alzheimer's are progressive memory loss, difficulty performing routine tasks, confusion, mood swings, and trouble communicating.

However, the autoimmune attack on muscle, kidney, and liver tissue is not one of the symptoms of Alzheimer's disease. Instead, this symptom is associated with autoimmune diseases such as lupus and rheumatoid arthritis, in which the immune system mistakenly attacks healthy tissue in the body. Therefore, option d is the correct option. The other options, a, b, c, and e, are the symptoms of Alzheimer's disease.

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______________________is the process by which antibodies bind to epitopes on the surface of a virus or protein toxin and block attachment to and entry into host cells.
The acute phase response
Opsonization
Recruitment of phagoscytes
Activation of complement
Neutralization

Answers

Neutralization is the process by which antibodies bind to epitopes on the surface of a virus or protein toxin and block their attachment to and entry into host cells.

When a pathogen enters the body, the immune system produces specific antibodies that recognize and bind to specific regions on the pathogen's surface called epitopes. In the case of neutralization, these antibodies bind to epitopes critical for the pathogen's attachment or entry into host cells.By binding to these epitopes, antibodies prevent the pathogen from interacting with cellular receptors, thus neutralizing its infectivity. This mechanism is particularly important in preventing viral infections, where neutralizing antibodies can inhibit the virus from entering and infecting host cells.Neutralization is one of the key effector functions of antibodies and plays a crucial role in immune defense against pathogens. It can contribute to the clearance of pathogens from the body by rendering them unable to infect and replicate within host cells.

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Which represents the correct hierarchical information processing of a visual stimulus.
a) Concentric/center-surround on/off cells - Complex cells - Simple cells.
b) Bipolar Cells- V1 layer II-III On/Off center-surround cells - LGN cells - area V2.
c) Retinoganglion cells - Photoreceptors - Lateral geniculate nucleus (LGN) - area V1.
d) Photoreceptors- On/Off center-surround cells - Simple cells - Complex Cells.

Answers

The correct hierarchical information processing of a visual stimulus is as follows: Retinoganglion cells - Photoreceptors - Lateral geniculate nucleus (LGN) - area V1. Therefore, option (c) is correct.

In the brain, visual information goes through a series of processing phases. Light-sensitive cells in the eye are triggered by the light that falls on them when you look at an image, and they send information to the brain about what they are seeing.

The light-sensitive cells in the retina that are stimulated by light are called photoreceptors. They send information about the image to the ganglion cells, which are located at the back of the eye and receive input from several photoreceptors.

The output of the ganglion cells is sent to the lateral geniculate nucleus (LGN), which is a collection of neurons located in the thalamus. Finally, the LGN sends information to area V1 of the brain. As the information travels from one stage to the next, it is processed and refined.

Answer: The correct hierarchical information processing of a visual stimulus is option (c): Retinoganglion cells - Photoreceptors - Lateral geniculate nucleus (LGN) - area V1.

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How
many hairpin loops do ESR1 have? What is the predicted 3D structure
of ESR1?

Answers

The structure of the protein is primarily composed of alpha-helices and beta-sheets, and it is folded into a compact, globular shape.

ESR1, or estrogen receptor alpha, is a protein that is coded by the ESR1 gene.

It is a member of the steroid hormone receptor family,

and its primary function is to bind to estrogen and regulate gene expression.

ESR1 is composed of multiple domains,

including a DNA-binding domain,

a ligand-binding domain,

and an activation function domain.

The protein also contains several hairpin loops that are involved in stabilizing its three-dimensional structure.

The number of hairpin loops in ESR1 varies depending on the specific isoform of the protein.

The most common isoform of ESR1,

which is the one that is expressed in most tissues,

contains 12 hairpin loops.

However, other isoforms may contain more or fewer loops.

The predicted 3D structure of ESR1 can be modeled using computer algorithms based on its amino acid sequence.

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Proteolysis Targeting Chimeras? detailed answer please.
With the aid of a diagram briefly outline the principle of targeted protein by PROTACS and assess the pros/cons of this type of degradation technology.

Answers

Proteolysis Targeting Chimeras (PROTACs) are small molecules designed to selectively degrade target proteins by recruiting them to an E3 ubiquitin ligase for proteasomal degradation.

They consist of three main components: a ligand for the target protein, a ligand for the E3 ligase, and a linker connecting the two ligands. When the PROTAC binds to the target protein and the E3 ligase, the target protein is ubiquitinated and subsequently degraded by the proteasome. PROTACs offer several advantages as a protein degradation technology. First, they provide a highly specific and selective approach to degrade target proteins, enabling more precise control over protein levels compared to traditional inhibitors. Second, PROTACs can target proteins that were previously considered "undruggable" by directly modulating their levels. This opens up new possibilities for therapeutic interventions.

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What happens in the alveoli?
a. By diffusion, oxygen passes into the blood while carbon dioxide leaves it.
b. By diffusion carbon dioxide passes into the blood while oxygen leaves it.
c. By diffusion, oxygen and carbon dioxide pass into the blood from the lung.
d. By diffusion, oxygen and carbon dioxide leave the blood passing to the lungs.

Answers

In the alveoli, diffusion occurs. Oxygen passes into the bloodstream via diffusion, while carbon dioxide exits the bloodstream via the same mechanism.

The correct option is option (a).

Oxygen passes through the alveoli's walls and into the surrounding capillaries, while carbon dioxide travels in the opposite direction from the capillaries to the alveoli, where it may then be expelled from the body.

Thus, the exchange of gases occurs between the alveoli and the bloodstream, with oxygen diffusing from the former into the latter and carbon dioxide moving from the latter to the former. Oxygen passes into the bloodstream via diffusion, while carbon dioxide exits the bloodstream via the same mechanism.

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What determines the number of bonds an atom can form with other atoms? Select one:
A. how big the atom is
B. the charges surrounding the atom C. the number of electron shells D. the number of electrons it has in its outermost shell

Answers

The number of electrons an atom has in its outermost shell determines the number of bonds it can form with other atoms.

The amount of bonds an atom can establish with other atoms depends on how many electrons it has in its outermost shell. How many bonds an atom can create is determined by the number of electrons it has in its outermost shell. The outermost electrons are also referred to as valence electrons because they're the ones that interact with other atoms' valence electrons to form chemical bonds.Therefore, the correct answer is option D, which states that the number of electrons an atom has in its outermost shell determines the number of bonds it can form with other atoms.

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What is probability of Yyy trisomy produces YYy through selfing?.

Answers

In the case of trisomy YYY, the probability of YYy production via selfing is highly unlikely. The probability of Yyy trisomy produces YYy through selfing is zero or nil.

When it comes to chromosome abnormalities, trisomy is the presence of an extra chromosome copy in a cell or organism. It is often caused by non-disjunction errors that occur during meiosis, which result in unequal chromosome distribution among gametes. This type of trisomy is lethal in humans, but there is evidence that it can occur in plants without significantly affecting growth or reproductive capacity. However, trisomic plants often display morphological abnormalities, altered gene expression patterns, and decreased fertility.
During selfing, the probability of gamete fusion can be calculated using the principle of independent assortment. According to this principle, each chromosome pair segregates independently of each other during meiosis, resulting in four possible gamete combinations. In this case, Yyy trisomy would produce gametes with either two Y chromosomes or one Y and two y chromosomes. These gametes would then fuse with normal gametes to produce offspring with different combinations of chromosome copies.
The probability of producing YYy offspring from Yyy trisomic selfing would be calculated using the Punnett square method. For example, the Yyy gamete would be crossed with a normal yy gamete, resulting in the following Punnett square:
Y y y
y Yyy Yyy
y yy yy
The resulting offspring would be Yyy and yy in a 1:1 ratio, with no YYy offspring.

Therefore, the probability of YYy production via selfing in Yyy trisomic plants is zero.

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2. A 4-year-old girl was diagnosed with thiamine deficiency and the symptoms include tachycardia, vomiting, convulsions. Laboratory examinations reveal high levels of pyruvate, lactate and a-ketoglutarate. Explain which coenzyme is formed from vitamin B, and its role in oxidative decarboxylation of pyruvate. For that: a) describe the structure of pyruvate dehydrogenase complex (PDH) and the cofactors that it requires: b) discuss the symptoms which are connected with the thiamine deficiency and its effects on PDH and a-ketoglutarate dehydrogenase complex; c) explain the changes in the levels of mentioned metabolites in the blood; d) name the described disease.

Answers

Thiamine deficiency leads to symptoms such as tachycardia, lactate, and α-ketoglutarate, affecting the pyruvate dehydrogenase complex (PDH) and α-ketoglutarate dehydrogenase complex, and causing the disease known as beriberi.

a) Structure of Pyruvate Dehydrogenase Complex (PDH) and Cofactors:

The pyruvate dehydrogenase complex (PDH) is a multienzyme complex located in the mitochondria and plays a vital role in cellular energy metabolism.

It consists of three main components: E1 (pyruvate dehydrogenase), E2 (dihydrolipoamide acetyltransferase), and E3 (dihydrolipoamide dehydrogenase).

b) Thiamine Deficiency Symptoms and Effects on PDH and α-Ketoglutarate Dehydrogenase Complex:

Thiamine deficiency, known as beriberi, can lead to various symptoms including tachycardia (rapid heart rate), vomiting, and convulsions. These symptoms are associated with the impairment of the PDH and α-ketoglutarate dehydrogenase complex (α-KGDH).

Thiamine is a crucial cofactor for both PDH and α-KGDH. In thiamine deficiency, the activity of these enzymes is disrupted, leading to a decrease in their functionality. PDH is responsible for the conversion of pyruvate to acetyl-CoA, while α-KGDH catalyzes the conversion of α-ketoglutarate to succinyl-CoA.

The reduced activity of PDH and α-KGDH in thiamine deficiency hampers the proper oxidation of pyruvate and α-ketoglutarate, respectively. Consequently, there is an accumulation of pyruvate, lactate, and α-ketoglutarate in the blood.

c) Changes in Metabolite Levels in Blood:

Laboratory examinations reveal high levels of pyruvate, lactate, and α-ketoglutarate in the blood of individuals with thiamine deficiency. The impaired activity of PDH and α-KGDH leads to a build-up of their respective substrates.

Pyruvate, instead of being converted to acetyl-CoA, accumulates, resulting in increased pyruvate levels. Similarly, α-ketoglutarate is not efficiently converted to succinyl-CoA, leading to elevated α-ketoglutarate levels.

d) Name of the Disease:

The described disease associated with thiamine deficiency, presenting symptoms of tachycardia, vomiting, convulsions, and high levels of pyruvate, lactate, and α-ketoglutarate, is known as thiamine deficiency or beriberi.

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If the scientific data on climate change is so conclusive, why
is it so difficult to implement international changes?

Answers

Climate change has resulted in severe environmental problems, including sea-level rise, melting glaciers, and increasing global temperatures.

The scientific data on climate change is indeed conclusive.

Scientists have produced compelling evidence that human activity is to blame for climate change.

While scientists have communicated the issue of climate change effectively, implementing international changes is a much more complex process.

There are several reasons why it is difficult to implement international changes to address climate change.

The first reason is that countries have different priorities and interests.

For example, developed countries may be more focused on economic development, while developing countries may prioritize reducing poverty and improving economic conditions.

As a result, countries may be unwilling to take action on climate change if it is perceived as being in conflict with their national interests.

The second reason is that international agreements are difficult to negotiate.

While there is a consensus among scientists about the need to address climate change, there is no consensus among countries about how to do it.

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Random mutation in the DNA sequence of a coding gene can lead to different genetic outcomes. Provide two examples of how a mutation can led to changes in a gene’s function and how this mutation could modify the gene.

Answers

Mutations can change the DNA sequence of a gene which results in different genetic outcomes. Different types of mutations occur in the DNA sequence which can either change a single nucleotide base or several bases in the DNA sequence.

The genetic outcome of a mutation is influenced by the type of mutation, the position of the mutation and its effect on the protein structure or gene function.


Here are two examples of how a mutation can lead to changes in a gene’s function and modify the gene
Sickle cell anemia is a genetic disease that is caused by a mutation in the HBB gene.

The HBB gene codes for the protein hemoglobin which is responsible for carrying oxygen in the blood. In sickle cell anemia, a mutation occurs in the HBB gene which causes the protein to be misfolded.

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Discuss the Zinkernagel and Doherty experiment to show the function of MHC molecules as a restriction element in T-cell proliferation. [60%]

Answers

The experiment conducted by Zinkernagel and Doherty, often referred to as the Zinkernagel-Doherty experiment, provided crucial evidence demonstrating the role of major histocompatibility complex (MHC) molecules as restriction elements in T-cell proliferation and immune recognition.

This experiment, which earned them the Nobel Prize in Physiology or Medicine in 1996, contributed significantly to our understanding of the immune system.

Background:

In the 1970s, Zinkernagel and Doherty were investigating the immune response to viral infections, particularly the lymphocytic choriomeningitis virus (LCMV), in mice. They noticed that mice with a specific genetic background (H-2^b) could effectively clear the LCMV infection, while mice with a different genetic background (H-2^k) were unable to do so.

Experimental Setup:

To investigate this phenomenon further, they conducted a series of experiments using mice with different MHC haplotypes. They infected two groups of mice, one with the H-2^b haplotype and the other with the H-2^k haplotype, with LCMV.

Results:

Zinkernagel and Doherty observed that mice with the H-2^b haplotype effectively eliminated the LCMV infection, while mice with the H-2^k haplotype failed to clear the virus. Surprisingly, when they mixed lymphocytes from both groups of mice, they found that only the lymphocytes from the H-2^b mice responded to the LCMV infection by proliferating and producing cytotoxic T cells (CTLs) specific to LCMV.

Key Findings and Interpretation:

The critical finding from the experiment was that the T-cell response was restricted by MHC molecules. T cells can only recognize antigens presented by MHC molecules on the surface of antigen-presenting cells (APCs). In this case, T cells from H-2^b mice could recognize LCMV antigens presented by MHC class I molecules on infected cells and initiate an immune response. However, T cells from H-2^k mice could not recognize the LCMV antigens because of the mismatch between the viral antigens and the MHC molecules they could recognize.

This demonstrated that MHC molecules act as restriction elements in T-cell proliferation and immune recognition. T cells can only recognize antigens when they are presented in association with MHC molecules that match the T cell's receptors (T cell receptor - TCR). This process is known as MHC restriction.

Significance:

The Zinkernagel-Doherty experiment provided strong evidence supporting the concept of MHC restriction in T-cell recognition and activation. It highlighted the importance of MHC molecules in determining immune responses, the specificity of T-cell recognition, and the rejection of foreign antigens. Their work had a profound impact on the field of immunology and contributed to our understanding of the immune system's intricacies.

It's important to note that the Zinkernagel-Doherty experiment was a landmark study, and its findings laid the foundation for further research on MHC molecules and T-cell recognition. Subsequent studies have expanded our knowledge of MHC diversity, peptide presentation, T-cell receptor diversity, and the broader functioning of the immune system.

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Jack has decided to do a trip to the mountains.He chooses to climb one of the highest mountains to challenge himself and push his limit. While he is reaching the top of the mountain, he starts to feel tired and has difficulty breathing.
a) Why does Jack have trouble breathing?
b)Explain what happens physiologically

Answers

a) Jack has trouble breathing because the air is thinner at higher altitudes.

b) Main answer: Jack's body has to work harder to get enough oxygen at higher altitudes, which can cause shortness of breath.

b) 80 words: The air pressure decreases as altitude increases, which means there is less oxygen in the air. This can make it difficult to breathe, and can lead to symptoms such as shortness of breath, fatigue, and headache.

Here are some additional details about what happens physiologically when a person climbs a mountain:

* The body's respiratory rate increases in an attempt to get more oxygen.

* The heart rate increases to pump more blood to the lungs to get more oxygen.

* The blood vessels in the lungs dilate to allow more oxygen to be absorbed into the bloodstream.

* The body produces more red blood cells to carry more oxygen.

These changes can help the body to adapt to the lower oxygen levels at higher altitudes, but they can also lead to symptoms such as shortness of breath, fatigue, and headache. If these symptoms become severe, it is important to descend to a lower altitude.

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1. The process of genetic selection is based on reproductive
practices that result in offspring with desired traits. These
practices are in use today in the animal industry, breeding animals
for desir

Answers

Genetic selection in humans can have both health benefits, such as improved disease resistance, and concerns, including potential health risks and ethical implications.

The health implications of genetic selection in humans can be both beneficial and concerning. On one hand, genetic selection can potentially lead to improvements in disease resistance, intelligence, or other desired traits. For example, genetic testing can identify individuals at risk for certain genetic disorders, allowing for proactive measures to be taken. Additionally, advancements in gene therapy hold promise for treating genetic diseases.

However, there are also health risks associated with genetic selection. Manipulating genes and altering genetic traits can have unforeseen consequences and long-term effects on health. Unintended side effects and interactions between genes could result in unexpected health issues. Furthermore, focusing solely on specific traits may neglect other important aspects of health, leading to potential imbalances or negative effects on overall well-being.

Socially and ethically, genetic selection raises concerns. It can exacerbate existing social inequalities if access to genetic enhancements becomes restricted, leading to a wider gap between different socioeconomic groups. Discrimination based on genetic traits could also arise, reinforcing stigmatization and inequities.

In terms of protein synthesis, if a gene doesn't turn on, the corresponding protein won't be synthesized, potentially leading to functional deficiencies. Substituting one nucleotide base for another or adding an extra nucleotide base can disrupt the reading frame during protein synthesis, resulting in altered protein structures or non-functional proteins.

Considering these health, social, and ethical implications is crucial when engaging in genetic selection practices to ensure the responsible and ethical application of genetic technologies.

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The complete question is:

1. The process of genetic selection is based on reproductive practices that result in offspring with desired traits. These practices are in use today in the animal industry, breeding animals for desired qualities such as increased milk production in diary cows or promoting desired characteristics in show dogs. Food products are genetically manipulated to have traits of disease resistance or increased production. What are the health implications of genetic selection in humans? What are the social and ethical implications? What would happen to protein synthesis if the gene didn’t turn on? If one of the nucleotide bases was substituted for another? If one extra nucleotide base was added to an exon? explain in detail your answer!!!

Factors affecting virulence may include which of the following? Choose all that apply.
a. presence of pathogenicity islands
b. ability to penetrate the host
c. the infectious dose
d. capsule
e. ribosomes
f. endoplasmic reticulum

Answers

Virulence factors are microbial molecules, proteins, and other factors that assist microbes to infect a host and evade host defenses. Therefore, the correct options are: a. Presence of pathogenicity islands b. Ability to penetrate the host c. The infectious dosed.

Pathogenicity Islands are genomic regions containing a group of virulence genes that are responsible for the virulence of a bacterium. The presence of pathogenicity islands is a significant factor in virulence. The ability to penetrate the host also plays a crucial role in virulence. The host's immune system must be overcome by pathogens for infection to occur.

The bacteria can gain access to the host's bloodstream by penetrating epithelial cells and infecting the host directly. Infectious dose is a factor in virulence. Bacteria with lower infectious doses are more virulent. Capsules are one of the virulence factors that bacteria use to evade the immune system. Capsules act as a protective barrier around bacteria, making it difficult for immune cells to identify and kill them.

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Activity 4. Identifying spinal cord structure Obtain a model of a cross section of a spinal cord and identify the following structures: Gray matter 0000000 anterior or ventral horni posterior or dorsa

Answers

Answer: In summary, a model of a cross-section of the spinal cord would reveal gray matter, which consists of the anterior or ventral horn and the posterior or dorsal horn.

The anterior horn contains motor neurons responsible for transmitting signals to skeletal muscles, while the posterior horn receives sensory input and relays it to higher brain regions.

Understanding the structure of the spinal cord is vital for comprehending its role in sensory and motor function within the body.

Explanation:

In a cross-section of the spinal cord, we can identify several structures, including the gray matter, anterior or ventral horn, and posterior or dorsal horn. Here's a breakdown of these structures:

Gray Matter: The gray matter of the spinal cord is located in the central region and appears darker in color compared to the surrounding white matter. It contains neuronal cell bodies, dendrites, and unmyelinated axons. The gray matter is primarily responsible for integrating and processing incoming and outgoing signals.

Anterior or Ventral Horn: The anterior or ventral horn of the gray matter is located on the front side of the spinal cord. It is responsible for housing the cell bodies of motor neurons that innervate skeletal muscles. The motor neurons in the anterior horn play a crucial role in transmitting signals from the central nervous system to the muscles, enabling voluntary movement.

Posterior or Dorsal Horn: The posterior or dorsal horn of the gray matter is located on the back side of the spinal cord. It receives sensory information from the body via sensory neurons, which enter the spinal cord through the dorsal root. The posterior horn is involved in relaying sensory signals, such as touch, temperature, and pain, to higher levels of the central nervous system for processing.

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