Stress can have a significant impact on various aspects of human physiology and psychology, including circadian rhythm and emotions.
Stress has a broad range of effects on the human body and mind. One of the areas affected by stress is the circadian rhythm, which refers to the body's internal clock that regulates sleep-wake cycles and other physiological processes. Chronic stress can disrupt the circadian rhythm, leading to sleep disturbances, irregular energy levels, and difficulties in maintaining a consistent daily routine.
Emotions are also strongly influenced by stress. Stressful situations can trigger emotional responses such as anxiety, fear, anger, and sadness. Moreover, prolonged or intense stress can contribute to the development of mental health issues such as depression and anxiety disorders. Stress affects the production and regulation of various neurotransmitters and hormones in the brain, which in turn influence emotional states and overall well-being.
In terms of heart rate, stress can significantly impact cardiovascular function. When a person experiences stress, the body activates the "fight-or-flight" response, leading to an increase in heart rate and blood pressure. These physiological changes prepare the body to deal with perceived threats. However, chronic or excessive stress can place strain on the cardiovascular system and contribute to the development of heart disease and other cardiovascular disorders.
In conclusion, stress has a widespread impact on human physiology and psychology. It can disrupt circadian rhythms, trigger emotional responses, and affect heart rate and cardiovascular health. Managing stress through various strategies such as relaxation techniques, exercise, and seeking support can help mitigate these effects and promote overall well-being.
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Humans can have type A blood, type B blood, type AB blood, or type o. Which of the following is a possible genotype for an individual with type B blood Answers A-D А ТА Br DAT
Among the given options, the possible genotype for an individual with type B blood is option B: B. This individual would have the genotype "BB" for the ABO blood group.
The ABO blood group system is determined by the presence or absence of specific antigens on the surface of red blood cells. In the case of type B blood, individuals have the B antigen present on their red blood cells.
The genotype for type B blood can be either homozygous (BB) or heterozygous (BO), as the B allele is responsible for producing the B antigen.
In this case, the genotype "BB" indicates that both alleles inherited by the individual are B alleles, resulting in the production of the B antigen on their red blood cells. This genotype is associated with type B blood.
To summarize, the possible genotype for an individual with type B blood is "BB."
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The 15 following is a list of some mRNA codons representing various amino acids. Met - AUG, Pro-CCC. Phe-UUU, Gly - GGC, GGU Leu – CUA, Arg - CGA, CGG Ser - UCU, Asp - AAU Thr - ACC, Val - GUA His - CAC A portion of a strand of DNA contains the following nucleotide sequence: 5'...AAA GAT TAC CAT GGG CCG GCT...3 (a) What is the mRNA sequence transcribed from it? (b) What is the amino acid sequence of this partially-synthesized protein? (c) What is the amino acid sequence if, during transcription, the third G on the left in the DNA is read as T? (d) What is the amino acid sequence if, during translation, the first two Us of the mRNA are not read and the fourth C from the left in the mRNA is not read or is deleted?
To transcribe the given DNA sequence into mRNA, we need to replace each nucleotide with its complementary base.
The complementary bases are A with U (uracil), T with A, C with G, and G with C. Transcribing the DNA sequence 5'...AAA GAT TAC CAT GGG CCG GCT...3' would give us the mRNA sequence:
3'...UUU CUA AUG GUA CCC GGC CGA...5'
(b) To determine the amino acid sequence of the protein, we can refer to the provided codons for each amino acid:
UUU - Phe, CUA - Leu, AUG - Met, GUA - Val, CCC - Pro, GGC - Gly, CGG - Arg
So, the amino acid sequence of the partially-synthesized protein would be:
Phe-Leu-Met-Val-Pro-Gly-Arg
(c) If the third G on the left in the DNA is read as T during transcription, the mRNA sequence would be:
3'...UUA UAU AUG GUA CCC GGC CGA...5'
The amino acid sequence would then be:
Leu-Tyr-Met-Val-Pro-Gly-Arg
(d) If, during translation, the first two Us of the mRNA are not read and the fourth C from the left in the mRNA is not read or is deleted, the mRNA sequence becomes:
3'...UAU AUG GUA CCC GGC CGA...5'
The amino acid sequence would be:
Tyr-Met-Val-Pro-Gly-Arg.
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which of the following microorganism inhibit adherence with
phagocytes because of the presence of m proteins
1. mycobacterium tuberculosis steptococcus pyogenes leishmania
klesiella pneumoniae
The microorganism that inhibits adherence with phagocytes because of the presence of m proteins is Steptococcus pyogenes.
What are m proteins?
M proteins are the fibrous surface proteins found on Streptococcus pyogenes bacteria.
M proteins are important virulence factors of the bacteria, and they play a role in the development of rheumatic fever and acute glomerulonephritis.
They can also be used to classify Streptococcus pyogenes bacteria into different strains.
They are capable of masking the bacteria's surface antigens, rendering them immune to phagocytosis.
The Streptococcus pyogenes bacterium has m proteins on its surface.
These proteins help the bacterium avoid being detected by immune cells and phagocytes.
As a result, the bacterium is able to evade the immune system and spread throughout the body, causing a variety of infections.
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7. Which neurons of the autonomic nervous system will slow the heart rate when they fire onto the heart? If input from those neurons is removed, how will the heart rate respond? (2 mark)
The neurons of the autonomic nervous system that slow down the heart rate are the parasympathetic neurons, specifically the vagus nerve (cranial nerve X). When these neurons fire onto the heart, they release the neurotransmitter acetylcholine, which binds to receptors in the heart and decreases the rate of firing of the heart's pacemaker cells, thus slowing down the heart rate.
If input from these parasympathetic neurons is removed or inhibited, such as through the administration of certain drugs or in certain pathological conditions, the heart rate will increase. This is because the parasympathetic input normally provides a balancing effect to the sympathetic nervous system, which tends to increase the heart rate. With the removal of parasympathetic input, the heart will be under the influence of the unopposed sympathetic stimulation, leading to an increase in heart rate.
The parasympathetic neurons that slow down the heart rate are part of the vagus nerve (cranial nerve X), specifically the cardiac branches of the vagus nerve. These neurons innervate the sinoatrial (SA) node, the natural pacemaker of the heart.
When these parasympathetic neurons are activated, they release acetylcholine, which binds to muscarinic receptors on the SA node. This binding leads to a decrease in the rate of depolarization of the SA node cells, slowing down the generation and conduction of electrical impulses in the heart. As a result, the heart rate decreases.
If the input from the parasympathetic neurons is removed or inhibited, such as in conditions where the vagus nerve is damaged or in the absence of parasympathetic stimulation, the heart rate will be influenced primarily by sympathetic stimulation. The sympathetic nervous system is responsible for increasing the heart rate and enhancing cardiac output in response to various stressors and demands.
Therefore, in the absence of parasympathetic input, the heart rate will increase as the sympathetic influence becomes dominant. This can lead to a higher heart rate, increased contractility, and overall increased cardiovascular activity.
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Lisa took a prescription medication that blocked her nicotinic receptors. i. Name the neurotransmitter that was blocked from binding. ii. Which ANS subdivision has been impacted? iii. Based on your an
i. The neurotransmitter that was blocked from binding is acetylcholine.
ii. The autonomic nervous system (ANS) subdivision that has been impacted is the parasympathetic nervous system.
iii. Based on the information provided, the blocking of nicotinic receptors by the medication is likely to result in decreased parasympathetic activity, leading to effects such as decreased salivation, decreased gastrointestinal motility, and increased heart rate.
i. The neurotransmitter that was blocked from binding is acetylcholine. Nicotinic receptors are a type of receptor in the nervous system that specifically bind to acetylcholine.
ii. The autonomic nervous system (ANS) is responsible for regulating involuntary bodily functions. It is divided into two subdivisions: the sympathetic nervous system and the parasympathetic nervous system. In this case, since the medication blocked nicotinic receptors, which are predominantly found in the parasympathetic division, the parasympathetic subdivision of the ANS has been impacted.
iii. Blocking nicotinic receptors in the parasympathetic division of the ANS would result in decreased parasympathetic activity. The parasympathetic nervous system is responsible for promoting rest and digestion. Its effects include increased salivation, increased gastrointestinal motility, and decreased heart rate. By blocking the nicotinic receptors, the medication would interfere with the binding of acetylcholine and subsequently decrease the parasympathetic response, leading to the opposite effects mentioned above, such as decreased salivation, decreased gastrointestinal motility, and increased heart rate.
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While shadowing doctors in the ER, a patient with a gun shot wound receives a blood transfusion. Surgeons take care of his wounds, but the blood transfusion was of the incorrect ABO type. Which of the following would not happen?
O a Type II hypersensitivity reaction
O significant production of complement anaphylotixins
O IgG mediated deposition of complement on the transfused RBCs
O the formation of MACS on the transfused RBCs
O Massive release of histamine
O The patient becomes very jaundice as transfused RBCs are lysed
In the case of an incorrect ABO blood transfusion, the most unlikely event is that the patient becomes very jaundiced as transfused RBCs are Lisdawati is blood? Blood is a specialized body fluid that delivers necessary substances.
The cells in the body steady a supply of oxygen for energy and the expulsion of carbon dioxide is essential. Blood provides a means for the transportation of these necessary substances, as well as cellular waste.
BO blood Groups: BO blood groups are the most important blood groups, which is determined by the presence of antigen A, B, or absence of antigen A and B on red blood cells, and antibodies in plasma (anti-A and anti-B).
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True or False?
The transfer of heat from one body to another takes place only when there is a temperature difference between the bodies
Answer: True
Explanation: heat, energy that is transferred from one body to another as the result of a difference in temperature. If two bodies at different temperatures are brought together, energy is transferred—i.e., heat flows—from the hotter body to the colder.
Write 3000 words about Strawberry; consider temperate zone.
Strawberries are delicious, red fruits grown in the temperate zone, known for their sweet taste and texture.
Rosaceae strawberries are tasty and colourful. Their sweetness, juiciness, and vivid red colour make them popular. Strawberries grow in temperate climates globally.
Strawberry varieties and cultivation determine whether they are perennials or annuals in temperate climates. These areas have four seasons, with moderate winters and pleasant summers. The moderate environment allows strawberry plants to thrive naturally
Strawberry plants grow from seeds or transplants. Planting in the temperate zone usually occurs in spring or early summer when soil temperatures are warm enough.
Temperate strawberry plants develop actively in summer. They need plenty of sunshine, steady rainfall, and well-drained soil. Proper irrigation prevents water stress and ensures fruit growth. Mulching also prevents weeds, retains moisture, and protects fruit from dirt splashing.
Strawberry plants dormancy in fall. Active growth stops and new runners, thin stems that allow the plant to reproduce vegetatively, grow. The horizontal runners produce additional plantlets that may be rooted and utilised to enlarge the strawberry crop or transferred.
Strawberries in temperate climates struggle in winter. If unprotected, cold temperatures can destroy plants. Farmers utilise straw, and row coverings to prevent plants from freezing. These procedures protect plants from winter harm and ensure their survival till April.
Temperate strawberries grow again in April. New leaves and flowers emerge from hibernation. Strawberry need bees and other pollinators to produce fruit.
Depending on type and environment, fruiting happens late spring to early summer. Red berries ripen from green. Hand-picking ripe strawberries avoids harming them.
Strawberry adaptability makes them popular in temperate regions. They're great in salads, desserts, jams, preserves, and drinks. Their sweet-tangy taste enhances many foods.
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If vision is lost, sensory information relayed through the hands
typically becomes more detailed and nuanced. How might this change
be represented in the primary sensory cortex?
The brain is able to adapt to the changes in sensory input and allocate more resources to other senses to compensate for the lost sense.
If vision is lost, the sensory information relayed through the hands typically becomes more detailed and nuanced.
This change can be represented in the primary sensory cortex by increasing the size of the hand area within the primary sensory cortex.
The primary sensory cortex is the region of the brain responsible for processing the sensory information relayed to it from the peripheral nervous system.
It receives signals that are generated by the senses and sends them to different parts of the brain for further processing.
When an individual loses vision, they become more attuned to their sense of touch.
This change in the sensory experience can be represented in the primary sensory cortex by increasing the size of the hand area.
This is because the region of the cortex that is responsible for processing tactile information from the hands becomes more active and larger in size.
This phenomenon is known as cortical reorganization, and it is a common occurrence in individuals who have lost one of their senses.
The brain is able to adapt to the changes in sensory input and allocate more resources to other senses to compensate for the lost sense.
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6. Which is not correct regarding the hypothalamo-hypophyseal portal system? a. The system includes two capillary plexuses b. The system carries venous blood c. The system is the circulatory connectio
The hypothalamo-hypophyseal portal system is the circulatory connection between the hypothalamus and the anterior pituitary gland. This portal system carries venous blood between the two capillary plexuses.The correct answer is option C.
The hypothalamo-hypophyseal portal system is the circulatory connection between the hypothalamus and the anterior pituitary gland. It includes two capillary plexuses and carries venous blood from the hypothalamus to the anterior pituitary gland. In the first capillary plexus, the hypothalamus secretes regulatory hormones into the blood, which then travel through the portal veins to the second capillary plexus, where they stimulate or inhibit the secretion of anterior pituitary hormones. This allows for precise control of hormone secretion by the anterior pituitary gland.The hypothalamus secretes several hormones that regulate the secretion of anterior pituitary hormones. These hormones are referred to as releasing hormones or inhibiting hormones.
For example, the hypothalamus secretes thyrotropin-releasing hormone (TRH), which stimulates the anterior pituitary gland to secrete thyroid-stimulating hormone (TSH). The hypothalamus also secretes prolactin-inhibiting hormone (PIH), which inhibits the anterior pituitary gland from secreting prolactin. The hypothalamus and anterior pituitary gland work together to regulate a wide range of physiological processes, including growth, metabolism, and reproduction.In summary, the hypothalamo-hypophyseal portal system is a specialized circulatory connection that allows for precise control of hormone secretion by the anterior pituitary gland. The system includes two capillary plexuses and carries venous blood from the hypothalamus to the anterior pituitary gland. The hypothalamus secretes regulatory hormones into the blood, which then travel to the second capillary plexus, where they stimulate or inhibit the secretion of anterior pituitary hormones.
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4.1.10 There are a number of ways in which cancer can evade the immune response. Which of the following cell types is able to kill malignant cells that have stopped expressing class I MHC?
a.macrophages
b.CD4⁺ T cells
c.NK cells
d.CD8⁺ T cells
NK cells (natural killer cells) . is able to kill malignant cells that have stopped expressing class I MHC
NK cells are a type of lymphocyte that plays a critical role in the immune response against cancer cells. They are capable of recognizing and killing target cells, including malignant cells, that have lost or downregulated the expression of class I major histocompatibility complex (MHC) molecules. Class I MHC molecules are normally expressed on the surface of healthy cells and play a role in presenting antigens to CD8⁺ T cells.
When cancer cells downregulate or lose expression of class I MHC molecules, they can evade recognition and destruction by CD8⁺ T cells, which primarily rely on the recognition of antigens presented by class I MHC molecules. However, NK cells have the ability to directly recognize and kill these cancer cells through a process known as "missing-self recognition." NK cells possess activating receptors that can detect the absence or alteration of class I MHC molecules on target cells, triggering their cytotoxic activity.
Therefore, in the absence of class I MHC expression, NK cells play a crucial role in eliminating malignant cells and providing a defense against cancer evasion from the immune response.
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Briefly describe how the 3 different types of neurotransmitters are synthesized and stored. Question 2 Briefly describe how neurotransmitters are released in response to an action potential.
Neurotransmitters are chemical messengers that transmit signals across synapses from one neuron to another, as well as from neurons to muscles or glands.
They are classified into three categories, each of which is synthesized and stored differently. These categories are:Acetylcholine, monoamines, and amino acidsAcetylcholine is synthesized by combining choline and acetyl CoA in nerve terminals using the enzyme choline acetyltransferase (ChAT). Once synthesized, acetylcholine is stored in vesicles in nerve terminals.Monoamines are synthesized from dietary amino acids, such as phenylalanine, tyrosine, and tryptophan. Monoamines are synthesized using enzymes present in neurons, such as tyrosine hydroxylase and dopamine β-hydroxylase. Once synthesized, monoamines are stored in vesicles in nerve terminals.Amino acids are synthesized by neurons themselves. GABA, for example, is synthesized from glutamate, while glutamate is synthesized from α-ketoglutarate.
Once synthesized, amino acids are stored in vesicles in nerve terminals. The release of neurotransmitters occurs when an action potential reaches the terminal of a presynaptic neuron. This causes the depolarization of the nerve terminal, which in turn triggers the influx of calcium ions into the terminal. The increase in calcium ion concentration causes synaptic vesicles containing neurotransmitters to fuse with the membrane, releasing their contents into the synaptic cleft. Neurotransmitters bind to receptors on the postsynaptic neuron and trigger a response that allows for the propagation of the signal.
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Which type of secretion occurs destroying the entire cell as it releases its product? a. endocrine secretion b. merocrine secretion c. apocrine secretion d. holocrine secretion
The correct answer is d. holocrine secretion, where the entire cell is destroyed during the release of its product.
Holocrine secretion is a type of secretion in which the entire cell is destroyed during the process of releasing its product. This occurs when the secretory cells accumulate and store their product within their cytoplasm until it reaches a certain level of maturity. Once the product reaches the desired level, the entire cell disintegrates, releasing the accumulated secretion along with the cell debris.
Examples of holocrine secretion can be found in certain glands of the body, such as the sebaceous glands in the skin. Sebaceous glands produce sebum, an oily substance that helps lubricate and protect the skin and hair. In the case of sebaceous glands, the secretory cells accumulate sebum within their cytoplasm until they burst, releasing the sebum and cell fragments onto the skin's surface.
In contrast, other types of secretion, such as endocrine secretion, merocrine secretion, and apocrine secretion, do not involve the destruction of the entire cell. Endocrine secretion refers to the release of hormones directly into the bloodstream, while merocrine secretion involves the release of secretory products through exocytosis without any cell damage. Apocrine secretion is characterized by the release of secretory products along with a portion of the cell membrane.
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Which of the following about Km is true? a. Km can equal 0. b. Km is the substrate needed to achieve 25% Vmax. c. Km can inform binding affinity. d. Km can inform maximal velocity.
The answer that is true regarding Km is that Km can inform binding affinity. Km is also known as the Michaelis-Menten constant. The constant describes the relationship between the enzyme and the substrate.
It is used to determine the binding affinity of the enzyme for its substrate. In the case of enzymes, the binding affinity of a substrate and an enzyme is the strength of the interaction between the substrate and the active site of the enzyme. The lower the value of Km, the higher the binding affinity of the enzyme. A low Km indicates that the substrate and the enzyme can interact and form the enzyme-substrate complex quickly.
A high Km indicates that the substrate and enzyme are less efficient at forming the enzyme-substrate complex. Therefore, the correct answer to the question is option C, Km can inform binding affinity.
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Factor X can be activated O Only if the is Factor VII O Only if both intrinsic and extrinsic pathways are activated. O Only if the intrinsic pathway is acticated. O Only if the extrinsic pathway is ac
Factor X can be activated B. only if both intrinsic and extrinsic pathways are activated.
Blood clotting or coagulation is a complex process that requires the participation of several factors. Factor X is one of the clotting factors that participate in the coagulation cascade, a series of steps that culminate in the formation of a blood clot. When the lining of a blood vessel is injured, two pathways, the intrinsic and the extrinsic, initiate the clotting process. The extrinsic pathway is triggered by the release of tissue factor from damaged cells outside the blood vessels.
On the other hand, the intrinsic pathway is activated by the exposure of subendothelial collagen to blood after vessel damage. Once activated, the two pathways converge to activate factor X, which is then converted to factor Xa by a series of proteolytic cleavages. Factor Xa, in turn, activates prothrombin to thrombin, which converts fibrinogen to fibrin, the main protein that forms a blood clot. So therefore the correct answer is B. only if both intrinsic and extrinsic pathways are activated, Factor X can be activated.
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Different kinds of fatty acids could be metabolized by human cell, by using similar metabolic pathways. (a) (i) Upon complete oxidation of m vistic acid (14:0) , saturated fatty acid, calculate the number of ATP equivalents being generated in aerobic conditions. ( ∗∗∗ Show calculation step(s) clearly) [Assumption: the citric acid cycle is functioning and the mole ratio of ATPs produced by reoxidation of each NADH and FADH2 in the electron transport system are 3 and 2 respectively.] (6%)
Upon complete oxidation of myristic acid (14:0) in aerobic conditions, approximately 114 ATP equivalents would be generated.
To calculate the number of ATP equivalents generated upon complete oxidation of myristic acid (14:0), a saturated fatty acid, we need to consider the different metabolic pathways involved in its oxidation.
First, myristic acid undergoes beta-oxidation, a process that breaks down the fatty acid molecule into acetyl-CoA units. Since myristic acid has 14 carbons, it will undergo 6 rounds of beta-oxidation, producing 7 acetyl-CoA molecules.
Each round of beta-oxidation generates the following:
1 FADH2
1 NADH
1 acetyl-CoA
Now let's calculate the ATP equivalents generated from these products:
FADH2: According to the assumption given, each FADH2 can generate 2 ATP equivalents in the electron transport system (ETS). Since there are 6 rounds of beta-oxidation, we have 6 FADH2, resulting in 12 ATP equivalents (6 x 2).
NADH: Each NADH can generate 3 ATP equivalents in the ETS. With 6 rounds of beta-oxidation, we have 6 NADH, resulting in 18 ATP equivalents (6 x 3).
Acetyl-CoA: Each acetyl-CoA molecule enters the citric acid cycle (also known as the Krebs cycle or TCA cycle) and goes through a series of reactions, generating energy intermediates that can be used to produce ATP. One round of the citric acid cycle generates 3 NADH, 1 FADH2, and 1 GTP (which can be converted to ATP). Since we have 7 acetyl-CoA molecules, we will have 21 NADH, 7 FADH2, and 7 GTP (which is equivalent to ATP).
Calculating the ATP equivalents from acetyl-CoA:
NADH: 21 NADH x 3 ATP equivalents = 63 ATP equivalents
FADH2: 7 FADH2 x 2 ATP equivalents = 14 ATP equivalents
GTP (ATP): 7 ATP equivalents
Now we can sum up the ATP equivalents generated from FADH2, NADH, and acetyl-CoA:
FADH2: 12 ATP equivalents
NADH: 18 ATP equivalents
Acetyl-CoA: 63 ATP equivalents + 14 ATP equivalents + 7 ATP equivalents = 84 ATP equivalents
Finally, we add up the ATP equivalents from all sources:
12 ATP equivalents (FADH2) + 18 ATP equivalents (NADH) + 84 ATP equivalents (acetyl-CoA) = 114 ATP equivalents
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Plant rhabdoviruses infect a range of host plants and are transmitted by arthropod vectors. In regard to these viruses, answer the following questions:
a. Plant rhabdoviruses are thought to have evolved from insect viruses. Briefly describe the basis for this hypothesis? c. Recently, reverse genetics systems have been developed for a number of plant rhabdoviruses to generate infectious clones. What are the main components and attributes of such a system? (3 marks
a. The hypothesis that plant rhabdoviruses evolved from insect viruses is based on several pieces of evidence. Firstly, the genetic and structural similarities between plant rhabdoviruses and insect rhabdoviruses suggest a common ancestry.
Both groups of viruses possess a similar genome organization and share conserved protein motifs. Additionally, phylogenetic analyses have shown a close relationship between plant rhabdoviruses and insect rhabdoviruses, indicating a possible evolutionary link.
Furthermore, the ability of plant rhabdoviruses to be transmitted by arthropod vectors, such as insects, supports the hypothesis of their origin from insect viruses. It is believed that plant rhabdoviruses have adapted to infect plants while retaining their ability to interact with and utilize insect vectors for transmission. This adaptation may have occurred through genetic changes and selection pressures over time.
c. Reverse genetics systems for plant rhabdoviruses allow scientists to generate infectious clones of the virus in the laboratory. These systems typically consist of several key components:
Full-length cDNA clone: This is a DNA copy of the complete viral genome, including all necessary viral genetic elements for replication and gene expression. The cDNA clone serves as the template for generating infectious RNA.
Promoter and terminator sequences: These regulatory sequences are included in the cDNA clone to ensure proper transcription and termination of viral RNA synthesis.
RNA polymerase: A viral RNA polymerase, either encoded by the virus itself or provided in trans, is required for the synthesis of viral RNA from the cDNA template.
Transcription factors: Certain plant rhabdoviruses require specific host transcription factors for efficient replication. These factors may be included in the reverse genetics system to support viral replication.
In vitro transcription: The cDNA clone is used as a template for in vitro transcription to produce infectious viral RNA. This RNA can then be introduced into susceptible host plants to initiate infection.
The main attributes of a reverse genetics system for plant rhabdoviruses include the ability to manipulate viral genomes, generate infectious viral particles, and study the effects of specific genetic modifications on viral replication, gene expression, and pathogenicity. These systems have greatly facilitated the understanding of plant rhabdoviruses and their interactions with host plants and insect vectors.
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In a DNA bisulfite sequencing experiment, the following read count data for a given cytosine site in a genome were obtained:
Converted Read Unconverted Read
(Not methylated) (Methylated)
Cytosine Site 1 40 17
Other Sites 2130 361
1a : Specify a binomial statistical model for the above data and compute the MLE (Maximum Likelihood Estimation) for the model parameter, which should be the probability of methylation. (Round your answer to 3 decimal places)
1b: Assume that the true background un-conversion ratio = 0.04 is known, compute the one-sided p-value for the alternative hypothesis that the methylation proportion of cytosine site 1 is larger than the background. In your answer, use the R code `pbinom(q, size, prob)` to represent the outcome of the binomial CDF, i.e. the outcome of `pbinom(q, size, prob)` is ℙ( ≤ q) , where ~om( = prob, = size). 1c : Given the supplemented total counts for the rest of the genome, perform a new one- sided test to determine whether the methylation level on cytosine site 1 is significant or not.
Converted Read Unconverted Read
(Not methylated) (Methylated)
Cytosine Site 1 40 17
Other Sites 2130 361 P.S. You should not use the background un-conversion ratio in the last question. In your answer, you may use one of the pseudo codes ` pbinom(q, size, prob) `, ` phyper(q, m, n, k) `, and `pchisq(q, df)` to represent the CDF of binomial distribution, hypergeometric distribution, and chi-squared distribution respectively. For hypergeometric distribution, q is the number of white balls drawn without replacement, m is the number of white balls in the urn, n is the number of
black balls in the urn, k is the number of balls drawn from the urn.
1d : Assume you have obtained the following p-values for 5 sites at a locus in the genome:
p-value
Site 1 0.005
Site 2 0.627
Site 3 0.941
Site 4 0.120
Site 5 0.022
Compute the adjusted p-value with Bonferroni correction (if the adjusted p > 1, return the value of 1), and filter the adjusted p-value with alpha = 0.05. Which site remains significant after the adjustment? Name another adjustment method that is less stringent but more powerful than the Bonferroni correcti
In the given DNA bisulfite sequencing experiment, a binomial statistical model can be used to estimate the probability of methylation. The maximum likelihood estimation (MLE) for the methylation proportion at cytosine site 1 can be computed.
Additionally, the one-sided p-value can be calculated to test if the methylation proportion at cytosine site 1 is significantly larger than the known background un-conversion ratio. Lastly, the adjusted p-value with Bonferroni correction can be computed to identify significant sites after multiple testing, and an alternative adjustment method called False Discovery Rate (FDR) can be mentioned.
1a: To model the read count data for a given cytosine site, we can use a binomial distribution. The converted read count represents the number of successes (methylated cytosines), and the unconverted read count represents the number of failures (unmethylated cytosines). The MLE for the methylation probability is the ratio of converted reads to the total reads at that site: 40 / (40 + 17) = 0.701 (rounded to 3 decimal places).
1b: To compute the one-sided p-value for the alternative hypothesis that the methylation proportion at cytosine site 1 is larger than the background, we can use the binomial cumulative distribution function (CDF). The p-value can be calculated as 1 minus the CDF at the observed converted read count or higher, given the background un-conversion ratio. Assuming a size of the total reads (40 + 17) and a probability of methylation equal to the background un-conversion ratio (0.04), the p-value can be computed as pbinom(40, 57, 0.04).
1c: In order to perform a new one-sided test using the supplemented total counts for the rest of the genome, we would need the converted and unconverted read counts for the other sites. However, this information is not provided in the question.
1d: To compute the adjusted p-value with Bonferroni correction, we multiply each individual p-value by the number of tests conducted (in this case, 5). If the adjusted p-value exceeds 1, it is capped at 1. After adjusting the p-values, we can compare them to the significance level alpha (0.05) to identify significant sites. In this case, Site 1 remains significant (adjusted p-value = 0.025), as it is below the threshold. An alternative adjustment method that is less stringent but more powerful than Bonferroni correction is the False Discovery Rate (FDR) correction, which controls the expected proportion of false discoveries.
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Which of the following statements is TRUE about transcription
initiation
complexes required by eukaryotic RNA Polymerase Il?
O a. TFIlD recognizes and binds multiple promoter elements
O b. Mediator ha
Eukaryotic RNA Polymerase II requires a transcription initiation complex to begin transcription. The transcription initiation complex is composed of transcription factors, RNA polymerase, and other proteins.
The complex is formed at the promoter region of the DNA strand, which is recognized by transcription factors. Transcription initiation complexes are essential for the proper functioning of RNA Polymerase II.The correct statement regarding transcription initiation complexes required by eukaryotic RNA Polymerase Il is a. TFIlD recognizes and binds multiple promoter elements. TFIlD, a general transcription factor, is responsible for recognizing and binding to the TATA box, an essential element of the promoter region. In addition to recognizing the TATA box, TFIlD also binds to other promoter elements, such as the initiator element and downstream promoter elements. This binding helps to stabilize the transcription initiation complex, allowing RNA polymerase to begin transcription. The mediator is another general transcription factor, but it does not bind directly to the promoter region.
Instead, it interacts with transcription factors and RNA Polymerase II to help regulate transcription and ensure that it proceeds correctly.In summary, the transcription initiation complex is essential for the initiation of transcription by RNA Polymerase II. TFIlD recognizes and binds to multiple promoter elements, while the mediator interacts with other transcription factors and RNA Polymerase II to help regulate the process.
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if its right ill give it a
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Peristalasis can occur in the esophagus. True False
True.
Peristalsis can occur in the esophagus.
Peristalsis is a series of coordinated muscle contractions that helps propel food and liquids through the digestive system. It is an important process that occurs in various parts of the digestive tract, including the esophagus. The esophagus is a muscular tube that connects the throat to the stomach, and peristalsis plays a crucial role in moving food from the mouth to the stomach.
When we swallow food or liquids, the muscles in the esophagus contract in a coordinated wave-like motion, pushing the contents forward. This rhythmic contraction and relaxation of the muscles create peristaltic waves, which propel the bolus of food or liquid through the esophagus and into the stomach. This process ensures that the food we consume reaches the stomach efficiently for further digestion.
In summary, peristalsis can indeed occur in the esophagus. It is a vital mechanism that helps facilitate the movement of food and liquids through the digestive system, ensuring effective digestion and absorption of nutrients.
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Explain in you own words why arteriosclerosis and
atherosclerosis can lead to the development of heart diseases
(*list what happens with EACH disease?)
Arteriosclerosis and atherosclerosis are two related conditions that involve the hardening and narrowing of arteries, which can lead to the development of heart diseases. Here's an explanation of each disease and their respective consequences
Arteriosclerosis: Arteriosclerosis refers to the general thickening and hardening of the arterial walls. This condition occurs due to the buildup of fatty deposits, calcium, and other substances in the arteries over time. As a result, the arteries lose their elasticity and become stiff. This stiffness restricts the normal expansion and contraction of the arteries, making it more difficult for blood to flow through them. The consequences of arteriosclerosis include:
Increased resistance to blood flow: The narrowed and stiffened arteries create resistance to the flow of blood, making it harder for the heart to pump blood effectively. This can lead to increased workload on the heart and elevated blood pressure.
Reduced oxygen and nutrient supply: The narrowed arteries restrict the flow of oxygen-rich blood and essential nutrients to the heart muscle and other organs. This can result in inadequate oxygen supply to the heart, leading to chest pain or angina.
Atherosclerosis: Atherosclerosis is a specific type of arteriosclerosis characterized by the formation of plaques within the arterial walls. These plaques consist of cholesterol, fatty substances, cellular debris, and calcium deposits. Over time, the plaques can become larger and more rigid, further narrowing the arteries. The consequences of atherosclerosis include:
Reduced blood flow: As the plaques grow in size, they progressively obstruct the arteries, restricting the flow of blood. In severe cases, the blood flow may become completely blocked, leading to ischemia (lack of blood supply) in the affected area.
Formation of blood clots: Atherosclerotic plaques can become unstable and prone to rupture. When a plaque ruptures, it exposes its inner contents to the bloodstream, triggering the formation of blood clots. These blood clots can partially or completely block the arteries, causing a sudden interruption of blood flow. If a blood clot completely occludes a coronary artery supplying the heart muscle, it can lead to a heart attack.
Risk of cardiovascular complications: The reduced blood flow and increased formation of blood clots associated with atherosclerosis increase the risk of various cardiovascular complications, including heart attacks, strokes, and peripheral artery disease.
In summary, arteriosclerosis and atherosclerosis contribute to the development of heart diseases by narrowing and hardening the arteries, reducing blood flow, impairing oxygen and nutrient supply to the heart, and increasing the risk of blood clots and cardiovascular complications. These conditions underline the importance of maintaining a healthy lifestyle and managing risk factors such as high blood pressure, high cholesterol, smoking, and diabetes to prevent the progression of arterial diseases and reduce the risk of heart-related complications.
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Which of the following is true of a mature mRNA in eukaryotes?
it contains a poly A tail it is translated in the nucleus all of the answer choices are correct it is comprised of introns spliced together
A mature mRNA in eukaryotes contains a poly A tail. The poly A tail is a sequence of adenine nucleotides that are added to the 3' end of the mRNA molecule, after transcription has been completed.
The poly A tail is important for the stability and export of the mRNA molecule from the nucleus to the cytoplasm, where it will be translated into protein.The other answer choices are incorrect:It is not translated in the nucleus. Translation, which is the process of protein synthesis, occurs in the cytoplasm of the cell after the mRNA molecule has been transported out of the nucleus.
It is not necessarily comprised of introns spliced together. Introns are non-coding regions of the DNA sequence that are removed from the pre-mRNA molecule during RNA splicing. The mature mRNA molecule that is transported to the cytoplasm does not contain introns.
option d is incorrect.All of the answer choices are not correct as option b and d are incorrect. option a is correct.
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Mutations in the LDL receptor are a dominant trait causing hypercholesterolemia. A homozygous dominant female mates with a homozygous recessive male. What is the chance they will have a child with this disorder? 1) 100% 2) 0% 3) 25% 4) 50% 5) 75%
The chance that they will have a child with the disorder is 100%.
Hypercholesterolemia caused by mutations in the LDL receptor is a dominant trait, which means that individuals who inherit even one copy of the mutated gene will exhibit the disorder. In this scenario, the female is homozygous dominant (DD) for the trait, while the male is homozygous recessive (dd). The dominant trait will be expressed in all offspring when one parent is homozygous dominant.
Since the female is homozygous dominant (DD), she can only pass on the dominant allele (D) to her offspring. The male, being homozygous recessive (dd), can only pass on the recessive allele (d). Therefore, all of their offspring will inherit one copy of the dominant allele (D) and one copy of the recessive allele (d), resulting in them having the disorder. Thus, the chance of having a child with the disorder is 100%.
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What was the purpose of using a sample with only water, yeast and mineral oil (which did not have any of the tested sugars) in this experiment?
The purpose of using a sample with only water, yeast and mineral oil (which did not have any of the tested sugars) in an experiment is to provide a control.
A control is a standard sample used for comparison with the sample being tested to determine the effect of a particular treatment. In this case, the control group is used to observe and compare the effect of the different sugars on the yeast. The control group (sample with only water, yeast, and mineral oil) helps the researchers identify the significant differences that exist between the tested sugars and the control group.
The researchers can observe the results from the control group to understand the normal behavior of the yeast without any of the tested sugars, and then compare it with the other groups to determine the effect of the different sugars on the yeast.
Therefore, the sample with only water, yeast, and mineral oil (which did not have any of the tested sugars) was used to provide a standard for comparison with the sample being tested.
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When you recognize the characteristics of living
things, do you recognize virus as living?
if yes why?
if not, why not?
(please in your own words)
Although viruses share some similarities with living organisms, such as the ability to evolve and adapt to their environment, they lack the basic properties and cellular organization of living things. Therefore, viruses are not typically regarded as living things.
When you recognize the characteristics of living things, you may not recognize a virus as living as it lacks several fundamental characteristics of living things. For example, viruses cannot reproduce on their own; they require a host cell to replicate. Additionally, they do not generate or utilize energy, which is a fundamental characteristic of all living things.Furthermore, viruses do not have cellular organization and are not composed of cells, which is another vital characteristic of all living things. They are simply a piece of nucleic acid, either DNA or RNA, surrounded by a protein coat.Although viruses share some similarities with living organisms, such as the ability to evolve and adapt to their environment, they lack the basic properties and cellular organization of living things. Therefore, viruses are not typically regarded as living things.
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A restriction endonuclease breaks Phosphodiester bonds O Base pairs H-bonds O Peptide bonds
A restriction endonuclease breaks phosphodiester bonds in DNA.
Restriction endonucleases, also known as restriction enzymes, are enzymes that recognize specific DNA sequences and cleave the DNA at those sites. These enzymes play a crucial role in molecular biology techniques, such as DNA cloning and genetic engineering.
The primary function of a restriction endonuclease is to cleave the phosphodiester bonds between nucleotides in the DNA backbone. These phosphodiester bonds connect the sugar-phosphate backbone of the DNA molecule and form the structural framework of the DNA strand. By cleaving these bonds, restriction endonucleases create breaks in the DNA strand, resulting in fragments with exposed ends.
The recognition and cleavage sites of restriction endonucleases are typically specific palindromic DNA sequences. For example, the commonly used restriction enzyme EcoRI recognizes the DNA sequence GAATTC and cleaves between the G and the A, generating overhanging ends.
It is important to note that restriction endonucleases do not break base pairs or hydrogen bonds. Base pairs are formed through hydrogen bonding between complementary nucleotide bases (adenine with thymine or uracil, and guanine with cytosine) and remain intact during the action of restriction endonucleases.
While peptide bonds are involved in linking amino acids in proteins, restriction endonucleases do not cleave peptide bonds as their target is DNA, not protein.
In summary, restriction endonucleases break the phosphodiester bonds that connect nucleotides in the DNA backbone, allowing for the manipulation and analysis of DNA molecules in various molecular biology applications.
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Question 54 Which of the following is true regarding leukocidins? O They are secreted outside a bacterial cell They destroy red blood cells O They are superantigens O They are a type of A-B toxin O Th
Among the options listed, leukocidins are NOT a type of A-B toxin. The correct answer is option d.
Leukocidins are toxins that target and destroy white blood cells (leukocytes).
They are typically secreted outside the bacterial cell and can cause damage to the host's immune system by killing white blood cells. Leukocidins are not specific to red blood cells and do not act as superantigens, which are toxins that can overstimulate the immune system.
A-B toxins, on the other hand, are a type of bacterial toxin that consists of two components: an A subunit that is responsible for the toxic effect and a B subunit that binds to target cells.
The correct answer is option d.
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Complete question
Question 54 Which of the following is true regarding leukocidins?
a, They are secreted outside a bacterial cell
b. They destroy red blood cells
c. They are superantigens
d. They are a type of A-B toxin
In compact bone, the bone cells receive nourishment through minute channels called Select one O a lacunae b. lymphatics costeons O d. lamellae De canaliculi During the thyroidectomy procedure, the sup
In compact bone, the bone cells receive nourishment through minute channels called canaliculi.
Compact bone is one of the types of bone tissue found in the human body. It is dense and forms the outer layer of most bones. Within the compact bone, there are small spaces called lacunae, which house the bone cells known as osteocytes. These osteocytes are responsible for maintaining the health and integrity of the bone tissue.
To receive nourishment, the osteocytes in compact bone rely on a network of tiny channels called canaliculi. These canaliculi connect the lacunae and allow for the exchange of nutrients, oxygen, and waste products between neighboring osteocytes and the blood vessels within the bone. The canaliculi form a complex network that permeates the compact bone, ensuring that all bone cells have access to vital resources for their metabolic processes.
Overall, the canaliculi play a crucial role in providing nourishment to the bone cells in compact bone, facilitating the exchange of substances necessary for cell function and bone maintenance. This network ensures the vitality and health of the bone tissue, supporting its structural integrity and overall function in the skeletal system.
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2. State whether decreasing the amount of oxygen (02) in inhaled air increased, reduced or did not change arterial carbon dioxide partial pressure from ordinary. 3. State whether decreasing the amount of O, in inhaled air increased, decreased or did not change plasma pH from normal.
Decreasing the amount of oxygen in inhaled air increases the arterial carbon dioxide partial pressure from ordinary. While decreasing the amount of oxygen in inhaled air decreases the plasma pH from normal. Arterial carbon dioxide partial pressure refers to the measure of the carbon dioxide concentration in the blood plasma of arteries.
The normal range for arterial carbon dioxide partial pressure is 35-45 mm Hg (millimeters of mercury). However, in the case of a decrease in oxygen inhalation, the arterial carbon dioxide partial pressure will increase. Why does this happen? It's because when oxygen levels are low, the body tends to retain carbon dioxide rather than expel it.What is plasma pH?The pH level of the plasma is referred to as plasma pH.
The normal range for plasma pH is between 7.35 and 7.45. When there is a decrease in the amount of oxygen inhalation, plasma pH decreases as well. This is because carbon dioxide is retained, which creates an acidic environment in the plasma.
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This is a 5 part question.
In humans, not having albinism (A) is dominant to having albinism (a). Consider a
cross between two carriers: ax Aa. What is the probability that the first child will
not have albinism (A_)?
In humans, the presence of albinism (a) is a recessive trait while the absence of albinism (A) is dominant. Therefore, we can write Aa for individuals who are carriers of the albinism trait. Let us consider a cross between two carriers; ax Aa.
A Punnett square can be used to determine the probability of offspring phenotypes.
Ax A aAa aa Phenotypic Ratio:3:1
The above Punnett square represents the cross between two carriers. The possible gametes that can be produced by the mother and father are represented along the top and left of the table, respectively.
The phenotypes are listed along the left and top of the table as well. The inside of the table contains the possible genotype combinations of the offspring.
The probability of the first child not having albinism (A_) can be determined by adding the probability of the child having the genotype Aa or AA. Since the absence of albinism (A) is dominant, an individual with the genotype AA will not have albinism.
The probability of a child having an Aa genotype is 2/4, which can be calculated by adding the probabilities of the first two squares in the Punnett square. The probability of a child having an AA genotype is 1/4, which can be calculated by looking at the bottom left square of the Punnett square.
Therefore, the probability of the first child not having albinism is (2/4 + 1/4) = 3/4.
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